functional-annotation

Fast genome-wide functional annotation through orthology assignment

ATLAS - Three commands to start analyzing your metagenome data

Source ontology files for the Gene Ontology

An R package for performing STAAR procedure in whole-genome sequencing studies

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

Graph-based modeling environment for biology, including prototype editor and services

UniProt Id Mapping through API

This repository hosts the tracker for issues pertaining to GO annotations.

The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary

AmiGO is the public interface for the Gene Ontology.

A tool for domain based annotation with databases from the Conserved Domains Database

An R package for performing MetaSTAAR procedure in whole-genome sequencing studies

Demonstration of AI review of existing functional annotations

The Gene Ontology Helpdesk

RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.

A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA

An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline

Tool for integrative gene-based association analysis using GWAS summary stats

An R package for performing MultiSTAAR procedure in whole-genome sequencing studies