Demonstration of AI review of existing functional annotations
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Oct 7, 2026 - HTML
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functional-annotation
Here are 79 public repositories matching this topic...
Human gene annotations for the oncology domain
gene driver-genes annotations cancer-genomics cancer-research functional-annotation oncogenes gene-panels tumor-suppressor-genes
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Oct 7, 2026 - R
Source ontology files for the Gene Ontology
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Oct 7, 2026 - Makefile
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-analysis staar-pipeline
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Oct 2, 2026 - R
An R package for performing STAAR procedure in whole-genome sequencing studies
statistical-genetics whole-genome-sequencing functional-annotation rare-variant-analysis staar-procedure
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Oct 2, 2026 - R
Graph-based modeling environment for biology, including prototype editor and services
annotation owl ontology pathways curation geneontology functional-annotation monarchinitiative noctua noctua-models go-cam ai4curation
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Sep 25, 2026 - JavaScript
This is the digital version of my master project's logbook that is created by using Streamlit Python package to document all the command lines and codes that I ran to do my project so that other researchers can later reproduce the exact same analysis results
molecular-dynamics-simulation rna-seq-analysis functional-annotation protein-structure-prediction molecular-docking protein-structure-analysis pathway-enrichment-analysis go-enrichment multivariate-statistical-analysis deg-analysis de-novo-transcriptome-assembly
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Sep 24, 2026 - Jupyter Notebook
The tutorial for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, MetaSTAARlite and MetaSTAARliteSummary
meta-analysis statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-meta-analysis metastaar-lite-pipeline
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Sep 17, 2026 - R
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation multi-trait-analysis rare-variant-analysis staar-pipeline
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Sep 17, 2026 - R
A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAARlite pipeline
meta-analysis statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-meta-analysis metastaar-lite-pipeline
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Sep 17, 2026 - R
collection of functional annotation methods in plant genomics
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Sep 16, 2026 - Python
This repository hosts the tracker for issues pertaining to GO annotations.
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Sep 15, 2026 - Python
A Python-based tool for identifying and characterizing bioremediation-associated genes in bacterial genomes.
python bioinformatics genome-analysis functional-annotation bioremediation bacterial-genomics environmental-microbiology
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Sep 14, 2026 - Python
A reproducible modern re-analysis of the O67940_AQUAE protein-function case study, rebuilding the evidence chain behind annotation transfer with current databases, AlphaFold, structural comparison, residue mapping, provenance tracking, and explicit limits on what the computational workflow can and cannot prove.
python bioinformatics reproducible-research uniprot structural-bioinformatics functional-annotation mafft pfam protein-function-prediction homology alphafold provenance-tracking workflow-documentation aquifex-aeolicus
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Aug 26, 2026 - Python
Post-GWAS functional annotation of rs12950541 at the RPTOR locus | Pipeline PostGWAS Gallardo v1 | bioRxiv: 10.64898/2026.04.26.720864
bioinformatics gwas genomics bioinformatics-pipeline functional-annotation post-gwas type-2-diabetes rptor mtorc1
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Aug 25, 2026 - HTML
Bakta and Prokka call the same 87,859 CDS regions in 25 complete bacterial genomes, then give 51.7% of them different product names. Both wrap Prodigal, so they agree on gene boundaries and diverge on function. Grouped-by-genome ML shows the disagreement tracks database coverage, not sequence.
machine-learning random-forest scikit-learn bioinformatics-pipeline genome-annotation microbial-genomics comparative-genomics functional-annotation gene-prediction protein-function-prediction prodigal prokka prokaryotic-genomes bacterial-genomics bakta cds-prediction
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Aug 23, 2026 - Python
AmiGO is the public interface for the Gene Ontology.
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Aug 21, 2026 - JavaScript
Fast genome-wide functional annotation through orthology assignment
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Aug 13, 2026 - Python
RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.
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Oct 6, 2026 - Nextflow
A set of scripts for functional annotation of candidate loci or whole genomes.
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Jul 26, 2026 - Perl
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