Fast genome-wide functional annotation through orthology assignment
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Aug 13, 2026 - Python
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functional-annotation
Here are 23 public repositories matching this topic...
ATLAS - Three commands to start analyzing your metagenome data
snakemake annotation assembly metagenomics taxonomic-classifications genomic-binning functional-annotation
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May 28, 2026 - Python
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
visualization python bioinformatics cog genomics protein microbial-genomics comparative-genomics genome-analysis functional-analysis functional-annotation
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May 3, 2025 - Python
UniProt Id Mapping through API
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Sep 22, 2025 - Python
This repository hosts the tracker for issues pertaining to GO annotations.
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Sep 15, 2026 - Python
Multi-dimensional Annotation Class Integrative Estimation
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Jun 21, 2026 - Python
A pipeline to go from raw sequencing data to high quality bins and pretty plots.
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Sep 7, 2018 - Python
Exploratory Framework for Genotype-Phenotype Prediction
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Sep 29, 2026 - Python
A computational tools for improving the functional annotation of bacterial genomes and the classification of CDSs into cllusters of orthologous groups (COGs). It allows summarizing annotations from different resources to provide a more accurate annotation of genes regarding their assignment into COGs and their categories.
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Feb 19, 2024 - Python
collection of functional annotation methods in plant genomics
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Sep 16, 2026 - Python
ncRNA identification, annotation and functional prediction
bioinformatics pipeline gene-annotation lncrna ncrna functional-annotation gene-prediction functional-prediction bioinfo lncrna-pipeline ncrna-protein-interactions gene-function
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Dec 21, 2023 - Python
Python3 extension for DAVID Bioinformatics Tool
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Jan 28, 2022 - Python
A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch
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Mar 1, 2019 - Python
A Python-based tool for identifying and characterizing bioremediation-associated genes in bacterial genomes.
python bioinformatics genome-analysis functional-annotation bioremediation bacterial-genomics environmental-microbiology
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Sep 14, 2026 - Python
A multi-way annotator for genetic elements and genetic variations
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Dec 11, 2018 - Python
An epigenome-wide association study (EWAS) pipeline profiling DNA methylation (5mC) dynamics across post-mortem Alzheimer's brain regions. Investigates cell-type-specific differential methylation and chromatin accessibility correlations, utilizing OLS with robust standard errors and machine learning biomarker panel classification.
feature-selection dna-methylation biomarker-discovery alzheimers-disease functional-annotation epigenomics robust-regression neurodegeneration ewas pathway-enrichment differential-methylation-analysis neuroepigenetics braak-staging post-mortem-brain illumina-450k differentially-methylated-probes gse59685 machine-learning-biomarkers
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May 23, 2026 - Python
Bakta and Prokka call the same 87,859 CDS regions in 25 complete bacterial genomes, then give 51.7% of them different product names. Both wrap Prodigal, so they agree on gene boundaries and diverge on function. Grouped-by-genome ML shows the disagreement tracks database coverage, not sequence.
machine-learning random-forest scikit-learn bioinformatics-pipeline genome-annotation microbial-genomics comparative-genomics functional-annotation gene-prediction protein-function-prediction prodigal prokka prokaryotic-genomes bacterial-genomics bakta cds-prediction
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Aug 23, 2026 - Python
GWAS locus visualization and functional annotation workflows for variant interpretation.
visualization python gwas genomics statistical-genetics functional-annotation colocalization variant-interpretation
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Feb 6, 2026 - Python
Synthetic Python demo for annotating mock gene lists with UniProt-style functional and GO-term summaries.
python bioinformatics reproducible-research pandas uniprot functional-annotation portfolio-project go-terms
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Jun 19, 2026 - Python
Snakemake pipeline to benchmark 11 functional pathway annotation systems
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Jun 30, 2022 - Python
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