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1. Commits on Apr 5, 2017

   • moving SIFTS unit test to parse local file, since file from remote location has changed (and seems to contain inconsistent data)

     andreasprlic

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2. Commits on Apr 4, 2017

   • Refactoring FileDownload util to be a part of biojava-core project

     valasatava

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3. Commits on Mar 30, 2017

   • [maven-release-plugin] prepare for next development iteration

     josemduarte

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   • [maven-release-plugin] prepare release biojava-5.0.0-alpha8

     josemduarte

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   • [maven-release-plugin] prepare for next development iteration

     josemduarte

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   • [maven-release-plugin] prepare release biojava-5.0.0-alpha8

     josemduarte

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4. Commits on Mar 29, 2017

   • [maven-release-plugin] prepare for next development iteration

     josemduarte

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   • [maven-release-plugin] prepare release biojava-5.0.0-alpha8

     josemduarte

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   • more precise comparison of parsing speed between mtf and pdb file formats

     andreasprlic

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   • Merge pull request #4 from andreasprlic/mmtf105

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     josemduarte

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   • cleanup

     andreasprlic

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   • new unit test that compares a slightly larger structure.

     andreasprlic

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   • new version of test now only compares parsing in RAM

     andreasprlic

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   • Updating test after file was remediated

     josemduarte

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   • adding a parsing performance unit test for mmtf, that compares with pdb format parsing.

     andreasprlic

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5. Commits on Mar 28, 2017

   • Upgrading to mmtf 1.0.5

     josemduarte

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6. Commits on Mar 22, 2017

   • TestBond is updated to match the updated data in structure file used for test

     

     Yana Valasatava

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7. Commits on Mar 21, 2017

   • Create a test for the new parameters of the SmithWaterman3Daligner #552

     lafita

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   • Merge branch 'master' into smwatRmsd

     lafita

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8. Commits on Mar 18, 2017

   • Revert "[maven-release-plugin]prepare release biojava-5.0.0-alpha7"

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     josemduarte

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   • [maven-release-plugin]prepare release biojava-5.0.0-alpha7

     

     Jenkins

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9. Commits on Feb 18, 2017

   • Catching early if the representative atom array is empty

     josemduarte

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10. Commits on Feb 15, 2017

    • Removing some warnings from empty structure names

      sbliven

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    • Merge branch 'bugfixes-4.2' into master

      sbliven

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    • Fix Quaternary symmetry symmetry detection bug

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      sbliven

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11. Commits on Feb 10, 2017

    • Better rules for Quaternary symm self-alignments

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      sbliven

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12. Commits on Feb 6, 2017

    • Merge pull request #623 from andreasprlic/fix622

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      andreasprlic

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13. Commits on Jan 21, 2017

    • Now catching empty arrays in getCentroid

      josemduarte

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    • Now catching empty arrays in getCentroid

      josemduarte

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    • Less verbose logging in AsaCalculator

      josemduarte

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    • Fix for #631

      josemduarte

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    • Less verbose logging in AsaCalculator

      josemduarte

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    • Better logging in symmetry package

      josemduarte

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    • Fix for #631

      josemduarte

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14. Commits on Jan 13, 2017

    • Set default max RMSD for SmWat3D high to maintain default behavior

      lafita

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