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1. Commits on Jan 13, 2017

   • Add two more parameters to Smith-Wat3Daligner

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   • Add methods to delete alignment column from an AFPChain

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2. Commits on Jan 12, 2017

   • The fix to the insertion code issue to is use the ResidueNumber object as the hash key instead of a string made from the residue number. Fixes bug where structures with insertion codes were likely…

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     Matt Larson

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3. Commits on Jan 11, 2017

   • adding new size method to CCD, as an easy count for the nr. of ChemComps.

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   • and another shortcut for lpeptidelinking

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   • adding similar lookup table to ResidueType

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   • now without (or few) loops

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4. Commits on Jan 10, 2017

   • removing string quotation characters should not happen at this place.

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5. Commits on Dec 22, 2016

   • Issue 330: fixes for PDB Parser,

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     Matt Larson

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6. Commits on Dec 7, 2016

   • [maven-release-plugin]prepare for next development iteration

     

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   • [maven-release-plugin]prepare release biojava-4.2.5

     

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7. Commits on Nov 23, 2016

   • Adding non-standard sg check to pdb parser

     josemduarte

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   • Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.

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   • Adding non-standard sg check to pdb parser

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   • Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.

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   • Now using the new fields from CrystalBuilder

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   • Now using the new fields from CrystalBuilder

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8. Commits on Nov 22, 2016

   • Some extra rare fields in atom_sites

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   • Fixing npe introduced in last commit

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   • Some extra rare fields in atom_sites

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   • Fixing npe introduced in last commit

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   • Implementing new crystallographic metadata fields.

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   • Implementing new crystallographic metadata fields.

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   • Implementing parsing of atom_sites category in mmcif parser/consumer

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   • Javadoc correction

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   • Implementing parsing of atom_sites category in mmcif parser/consumer

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9. Commits on Nov 21, 2016

   • Merge pull request #600 from sbliven/fix557

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     andreasprlic

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10. Commits on Nov 10, 2016

    • Merge pull request #597 from sbliven/fix560

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      sbliven

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    • Allow partial residue ranges (#557)

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11. Commits on Nov 7, 2016

    • Update to biojava 5.0 ligand and chain model

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12. Commits on Nov 2, 2016

    • Moved addGroupToStructure methods to StructureTools

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      sbliven

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13. Commits on Oct 26, 2016

    • Add some handling of "?" in seq align position. E.g. for 5dn6

      abradle

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14. Commits on Oct 3, 2016

    • Fix unit tests

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      sbliven

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    • Ignore waters when calculating ligand proximity

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    • Reducing DEFAULT_LIGAND_PROXIMITY_CUTOFF to 5A

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      sbliven

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