Making Protein folding accessible to all!
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Sep 23, 2026 - Jupyter Notebook
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multiple-sequence-alignment
Here are 132 public repositories matching this topic...
Generation of protein sequences and evolutionary alignments via discrete diffusion models
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Jan 15, 2026 - Python
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
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Oct 6, 2026 - C++
Algorithm for ultra-scale multiple protein sequence alignments: 3 million ABC transporters analyzed in 5 minutes and 18 GB of RAM.
bioinformatics proteomics longest-common-subsequence pfam multiple-sequence-alignment sequence-similarity guide-tree
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Sep 10, 2026 - C++
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd long-reads multiple-sequence-alignment partial-order-alignment consensus-sequences banded-dp consensus-sequence alignment-graph gfa-format
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Sep 17, 2026 - C
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
visualization python bioinformatics genomics matplotlib sequence-alignment msa sequence-analysis multiple-sequence-alignment
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Dec 1, 2024 - Python
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
machine-learning bioinformatics pytorch biological-sequences hierarchical-clustering multiple-sequence-alignment neurips-2021
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Oct 14, 2023 - Python
A Julia package to analyze protein sequences, structures, and evolutionary information
bioinformatics biology proteins pdb protein-structure julia-language conservation mutual-information structural-bioinformatics protein-evolution pfam sifts multiple-sequence-alignment coevolution protein-sequence-analysis
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Oct 6, 2026 - Julia
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
visualization javascript evolution phylogenetic-trees beast phylogenetics virology mrbayes archaeopteryx paleontology phylodynamics multiple-sequence-alignment phyloxml archaeopteryx-js nextstrain auspice treetime nexus-format
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Oct 3, 2026 - JavaScript
Fast and accurate protein structure prediction
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Jan 17, 2025 - Python
🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
bioinformatics genetics sequence-alignment msa protein-domains multiple-sequence-alignment msa-viewer sequence-alignment-visualization msabrowser
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May 21, 2024 - JavaScript
Exploring Evolution-aware & free protein language models as protein function predictors
benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding
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Sep 28, 2024 - Python
Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning
deep-learning transfer-learning multiple-sequence-alignment rna-secondary-structure canonical-base-pairs pseudoknot-base-pairs lone-pairs direct-coupling-analysis evolutionary-information non-canonical-base-pairs homologous-sequence spot-rna2 base-triples
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Apr 3, 2021 - Perl
Multiple sequence alignment visualizer
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Jan 26, 2023 - JavaScript
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
bioinformatics tutorials linux-shell phylogenetics model-selection blast maximum-likelihood phylogenomics bioinformatics-scripts bash-scripting pangenomics multiple-sequence-alignment hmmer3 reciprocal-blast-hits profile-hmms
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Oct 29, 2025 - Shell
Improving long-read barcode-variant mapping using multiple sequence alignment.
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Apr 2, 2024 - Python
Genetic Algorithm enhanced DPAMSA
python bioinformatics reinforcement-learning deep-learning genetic-algorithm deep-reinforcement-learning multiple-sequence-alignment
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Oct 8, 2025 - Python
Scalable long read self-correction and assembly polishing with multiple sequence alignment
assembly ngs consensus correction long self msa reads contigs long-reads multiple-sequence-alignment polishing self-correction
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Feb 6, 2024 - C++
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Mar 4, 2026 - C
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.
bioinformatics mcp synthetic-biology computational-biology genbank crispr pcr plasmid molecular-biology sequence-alignment ai-agents claude primer-design sequence-analysis multiple-sequence-alignment bioinformatics-tool sanger-sequencing model-context-protocol mcp-app claude-science
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Sep 24, 2026 - TypeScript
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