ryandkuster
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ragnarok Public
RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.
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wrapptainer Public
Wrapptainer is just a little bash wrapper script to save time when running apptainer on bioinformatics tools. It's not super fancy or rigorously tested.
HTML MIT License UpdatedSep 2, 2026 -
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readsynth Public
metagenome simulation for targeted and reduced-representation sequencing
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deepend Public template
Forked from dependabot/demo🤖 Fork me to try out Dependabot
Ruby UpdatedJan 24, 2026 -
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squeegee Public
Parse bcftools normalized vg deconstruct vcf for SV annotations
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Qmatey Public
Forked from bodeolukolu/QmateyQuantitative metagenomic alignment and taxonomic exact-matching
Shell UpdatedSep 30, 2022 -
Bash-Oneliner Public
Forked from onceupon/Bash-OnelinerA collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
MIT License UpdatedJan 26, 2022 -
ngsComposer Public
Base-call error-filtering and read preprocessing pipeline for fastq libraries
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neural-networks-and-deep-learning Public
Forked from mnielsen/neural-networks-and-deep-learningCode samples for my book "Neural Networks and Deep Learning"
Python UpdatedFeb 24, 2021 -
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FOSS_capstone Public
Forked from lizsuter/FOSS_capstoneCapstone project for FOSS 2020 workshop
Shell MIT License UpdatedNov 5, 2020 -
EPP622_2020 Public
Forked from mestato/EPP622_2020HTML GNU Affero General Public License v3.0 UpdatedOct 21, 2020 -
reproducibility-tutorial Public
CyVerse Fall 2020 Data Management Tutorial
Shell GNU General Public License v3.0 UpdatedOct 8, 2020 -
Impractical_Python_Projects Public
Forked from rlvaugh/Impractical_Python_ProjectsCode & supporting files for chapters in book