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Implement export to cwl #98

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Merged
jan-janssen merged 25 commits into from
May 14, 2025
Merged

Implement export to cwl #98

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50a72c9
Implement export to cwl
jan-janssen May 13, 2025
2d68d5a
fixes
jan-janssen May 13, 2025
a8d0045
copy workflow file
jan-janssen May 13, 2025
a7e63ce
fix
jan-janssen May 13, 2025
c4a9a04
fix path
jan-janssen May 13, 2025
30e5eb5
copy file
jan-janssen May 13, 2025
cfb0425
last fix for tonight
jan-janssen May 13, 2025
57c5c4d
another try
jan-janssen May 13, 2025
157ce59
fix function name
jan-janssen May 13, 2025
92ee192
number all steps
jan-janssen May 13, 2025
2587488
fix links
jan-janssen May 13, 2025
1dbaf9c
add more CWL workflows
jan-janssen May 13, 2025
502de0f
more fixes
jan-janssen May 14, 2025
6e67fd6
more fixes
jan-janssen May 14, 2025
29274ee
black formatting
jan-janssen May 14, 2025
6653fdf
iterate over keys
jan-janssen May 14, 2025
b9554c9
create a cwl file for every node
jan-janssen May 14, 2025
ad57e17
fix import of internal functions
jan-janssen May 14, 2025
da9a348
Merge remote-tracking branch 'origin/main' into cwl
jan-janssen May 14, 2025
f3a34a7
fix internal functions
jan-janssen May 14, 2025
7cdd67c
fix spelling
jan-janssen May 14, 2025
7717fb8
Merge remote-tracking branch 'origin/main' into cwl
jan-janssen May 14, 2025
36921a1
fix function import
jan-janssen May 14, 2025
f501906
fix quantum espresso
jan-janssen May 14, 2025
007c90e
fix nfdi
jan-janssen May 14, 2025
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fix function import
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@jan-janssen
jan-janssen committed May 14, 2025
commit 36921a1093df6ff9ef0ed9bf1bcc2301b9cc5283
2 changes: 1 addition & 1 deletion python_workflow_definition/src/python_workflow_definition/cwl/__main__.py
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Expand Up @@ -29,7 +29,7 @@ def convert_argument(arg):
workflow_function = load_function(file_name=file_lst[0], funct=funct_lst[0])
else:
m, p = funct_lst[0].rsplit(".", 1)
workflow_function = importlib.import_module(m)
workflow_function = getattr(importlib.import_module(m), p)
kwargs = {
arg.split("=")[0][6:]: convert_argument(arg=arg.split("=")[-1])
for arg in argument_lst
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