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Implement export to cwl #98

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Merged
jan-janssen merged 25 commits into from
May 14, 2025
Merged

Implement export to cwl #98

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50a72c9
Implement export to cwl
jan-janssen May 13, 2025
2d68d5a
fixes
jan-janssen May 13, 2025
a8d0045
copy workflow file
jan-janssen May 13, 2025
a7e63ce
fix
jan-janssen May 13, 2025
c4a9a04
fix path
jan-janssen May 13, 2025
30e5eb5
copy file
jan-janssen May 13, 2025
cfb0425
last fix for tonight
jan-janssen May 13, 2025
57c5c4d
another try
jan-janssen May 13, 2025
157ce59
fix function name
jan-janssen May 13, 2025
92ee192
number all steps
jan-janssen May 13, 2025
2587488
fix links
jan-janssen May 13, 2025
1dbaf9c
add more CWL workflows
jan-janssen May 13, 2025
502de0f
more fixes
jan-janssen May 14, 2025
6e67fd6
more fixes
jan-janssen May 14, 2025
29274ee
black formatting
jan-janssen May 14, 2025
6653fdf
iterate over keys
jan-janssen May 14, 2025
b9554c9
create a cwl file for every node
jan-janssen May 14, 2025
ad57e17
fix import of internal functions
jan-janssen May 14, 2025
da9a348
Merge remote-tracking branch 'origin/main' into cwl
jan-janssen May 14, 2025
f3a34a7
fix internal functions
jan-janssen May 14, 2025
7cdd67c
fix spelling
jan-janssen May 14, 2025
7717fb8
Merge remote-tracking branch 'origin/main' into cwl
jan-janssen May 14, 2025
36921a1
fix function import
jan-janssen May 14, 2025
f501906
fix quantum espresso
jan-janssen May 14, 2025
007c90e
fix nfdi
jan-janssen May 14, 2025
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fix function name
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@jan-janssen
jan-janssen committed May 13, 2025
commit 157ce593c1372b6f58e2946c7413ae7ceaf83662
2 changes: 1 addition & 1 deletion python_workflow_definition/src/python_workflow_definition/cwl/__main__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ def load_function(file_name, funct):
module = importlib.util.module_from_spec(spec)
sys.modules["workflow"] = module
spec.loader.exec_module(module)
return getattr(module, funct)
return getattr(module, funct.split(".")[-1])


def convert_argument(arg):
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