All pull requests

Pull requests

• perf(db-clone): pipeline sed replacements and s5cmd s3 sync concurrently with db load

  #1180·corneliusroemer-agent opened Oct 1, 2026Collaborator·

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• feat(config): add sequencingApproach, drop library source/selection inputs, deprecate sequencingAssayType

  #1166·theosanderson-agent opened Sep 24, 2026Collaborator·

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• feat(website): visual polish pass (Pathoplexus overlay + bump to loculus#7404)

  #1162·theosanderson-agent opened Sep 23, 2026Collaborator·

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  1

• feat: Script to check biosample status on NCBI

  #1149·tombch opened Sep 17, 2026Contributor·

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  7

• Restructure PR description for Loculus version bumps

  #1138·maverbiest opened Sep 8, 2026Contributor·

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  8

• Draft doc on seqset API preview

  #1137·tombch opened Sep 8, 2026Contributor·

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  16

• fix: Replace NIAID Flickr links with archive.org links

  #1119·corneliusroemer opened Aug 25, 2026Contributor·

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  13

• Add missing Taxonium link-outs

  #1112·theosanderson opened Aug 14, 2026Member·

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  7

• feat: Remove unused yaml anchors

  #1102·corneliusroemer opened Aug 7, 2026Contributor·

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  1

• [wip] Add script to reduce toil of bumping/pruning prepro versions

  #1101·corneliusroemer opened Aug 7, 2026Contributor·

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• feat(config): temporarily revert options list changes - go back to pr…

  #1097·anna-parker opened Aug 6, 2026Contributor·

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  1

• docs: add "How to cite a SeqSet" section

  #1094·corneliusroemer opened Aug 5, 2026Contributor·

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  4

• feat: apply guaranteed QoS for all required/user-facing pods and reduce requested silo/lapis mem for ebola-bdbv and andv

  #1014·anna-parker opened Jun 5, 2026Contributor·

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  12

• Test backend load without modifications

  #992·corneliusroemer opened May 29, 2026Contributor·

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• test if rarely calling get released data (20min) reduces backend cpu measurably

  #991·corneliusroemer opened May 29, 2026Contributor·

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• test if using lower zstd compression level 10 reduces backend cpu measurably

  #990·corneliusroemer opened May 29, 2026Contributor·

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• Use separate 100s ranges for each organism's prepro version for db efficiency

  #988·corneliusroemer opened May 29, 2026Contributor·

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  5

• Andes and BDBV improvements

  #983·anna-parker opened May 29, 2026Contributor·4 tasks done·

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  2

• Remove discussion.pathoplexus links

  #911·anna-parker opened Apr 28, 2026Contributor·

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  1

• Feature-editing data use terms

  #908·arthurshem86 opened Apr 22, 2026Contributor·

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• Draft doc on using seqset API

  #870·arthurshem86 opened Mar 23, 2026Contributor·

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  40

• Test3

  #821·theosanderson opened Feb 23, 2026Member·

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• Fix 400 error when using multi-select on integer/float fields

  #747·theosanderson with CopilotAI opened Nov 24, 2025·

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• doc-css

  #701·theosanderson opened Oct 9, 2025Member·

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• recreated Alignment insertion tests

  #645·anna-parker opened Sep 10, 2025Contributor·

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