Issues

• workflow/rules/gecco.smk issue

  NBChub/bgcflow#371 · Filter by author ghost opened on Jun 2, 2025

• "Error in rule bigslice" and "Macro Syntax Error" for bigscape/arts markdown report

  NBChub/bgcflow#370 · Filter by author alpole23 opened on Feb 20, 2025
  1

• Possible issue with file path in bgcflow\workflow\rules\common.smk

  NBChub/bgcflow#369 · Filter by author MagnusHaahr opened on Feb 6, 2025
  5

• Mamba 2 breaks snakemake

  NBChub/bgcflow#368 · Filter by author matinnuhamunada opened on Dec 5, 2024
  1

• BGFLOW error

  NBChub/bgcflow#366 · Filter by author sadhanokar opened on Dec 5, 2024
  6

• Remove comma from GTDB Graphml

  NBChub/bgcflow#363 · Filter by author matinnuhamunada opened on Oct 14, 2024

• Running BGCFlow in DTU LSF HPC

  NBChub/bgcflow#361 · Filter by author matinnuhamunada opened on Oct 10, 2024
  2

• Error in Generating Markdown Report for eggNOG-Roary - Proposed Solution

  NBChub/bgcflow#360 · Filter by author andrekind17 opened on Sep 26, 2024
  2

• GECCO Error

  NBChub/bgcflow#359 · Filter by author andrekind17 opened on Sep 25, 2024
  2

• bgcflow run -n command

  NBChub/bgcflow#358 · Filter by author coderbins opened on Sep 23, 2024
  11

• genome_id = sequence in df_arts

  bug
  NBChub/bgcflow#357 · Filter by author Sam-Will opened on Sep 17, 2024
  1

  

• Server port: Auto-assign ports for database with report.

  enhancement
  NBChub/bgcflow#351 · Filter by author SPBorkar04 opened on Jul 9, 2024
  1

  

• How to use Custom input directory?

  good first issuequestion
  NBChub/bgcflow#349 · Filter by author 540889956 opened on Jun 12, 2024
  7

  

• Fail to build database when multiple antiSMASH version result are present

  NBChub/bgcflow#346 · Filter by author matinnuhamunada opened on May 1, 2024

• Run fails on Antismash "pip is looking at multiple versions of antismash to determine which version is compatible with other requirements."

  NBChub/bgcflow#341 · Filter by author artfet opened on Apr 26, 2024
  1

• ARTS summary table showed wrong values for some of the genome_ids

  NBChub/bgcflow#330 · Filter by author matinnuhamunada opened on Feb 26, 2024

• Feature request, make GTDB API resource available offline

  NBChub/bgcflow#312 · Filter by author matinnuhamunada opened on Dec 19, 2023

• Defining local rules

  NBChub/bgcflow#307 · Filter by author matinnuhamunada opened on Dec 6, 2023

• GTDBtk offline mode fails

  NBChub/bgcflow#303 · Filter by author matinnuhamunada opened on Nov 27, 2023

• Use environment variables to point for resources

  NBChub/bgcflow#301 · Filter by author matinnuhamunada opened on Nov 9, 2023

• Speed up emapper annotation

  NBChub/bgcflow#293 · Filter by author matinnuhamunada opened on Oct 11, 2023

• bgcflow wrapper failed to read the resource config file on python 3.12

  NBChub/bgcflow#287 · Filter by author matinnuhamunada opened on Oct 5, 2023

• Shell error in downstream_bgc_prep_selection rule: Argument list too long

  bug
  NBChub/bgcflow#286 · Filter by author OmkarSaMo opened on Oct 2, 2023

• Pandas future warning

  NBChub/bgcflow#284 · Filter by author matinnuhamunada opened on Sep 27, 2023

• Feature request phylogenetic analysis subworkflow

  NBChub/bgcflow#261 · Filter by author OmkarSaMo opened on Jul 15, 2023
  2