GPU accelerated genome-scale modelling

A framework for simulating arbitrary particle dynamics written in and inspired by the Rust programming language

A collection of genomics software tools written in Rust

Molecular dynamics simluations

Repository for molar crate and its dependencies

A fully open source biomolecular structure prediction model based on AlphaFold3

Easy to use suite for designing a wide range of protein binder modalities.

Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (built on La-Proteina) with inference-time optimization.

A fast, programmable molecular viewer for research, scripting, and the web

Open-source desktop research assistant for computational biology and protein design

The implementation for the paper "Scalable Peptide Design via Memory-Efficient Equivariant Transformer"

Successful Job Applications and Grants

Open grants list

A library for reading mzDB files from Rust, Python and R

Bioinformatics I/O libraries in Rust

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of prot…

NonEquilibrium Reaction-Diffusion Self-assembly Simulator

A complete alternative for Overleaf with VSCode + Web + Git Integration + Copilot + Grammar & Spell Checker + Live Collaboration Support. Based on GitHub Codespace and Dev container.

CeTZ: ein Typst Zeichenpaket - A library for drawing stuff with Typst.

A bi-directional converter between Typst and LaTeX. Available as both a CLI tool and a Web interface.

MCP server that connects Claude Code to a live PyMOL session over XML-RPC

Universal differential equations for discovering the crosstalk between p53 & NF-kB pathways