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1. Commits on Dec 12, 2017

   • Merge pull request #716 from josemduarte/chainTransformAltlocs

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2. Commits on Dec 9, 2017

   • Recursive transform for group

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3. Commits on Dec 8, 2017

   • Fixes for translate functions, similar to #715

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   • Fixing also Calc.transform(Structure,Matrix4d)

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4. Commits on Dec 7, 2017

   • Fix and unit test for #715

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   • New demo for mmcif to pdb conversion

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5. Commits on Nov 16, 2017

   • Better logging

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   • Removing almost all warnings in structure module, some logging changes

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6. Commits on Oct 26, 2017

   • Minor bugfix and some new tests for it

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7. Commits on Oct 18, 2017

   • Merge pull request #706 from josemduarte/issue704

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8. Commits on Oct 17, 2017

   • ignore chains that do not have representative atoms, e.g. 4LKE chain G.

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9. Commits on Oct 16, 2017

   • Merge pull request #710 from josemduarte/issue708

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10. Commits on Oct 11, 2017

    • Now identical clustering performed on 95% identical sequences

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11. Commits on Oct 10, 2017

    • Better fix for null subunits as advised by @lafita

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12. Commits on Oct 9, 2017

    • A fix for #708

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    • Small fix for cloning

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13. Commits on Oct 7, 2017

    • several fixes for biological assemblies calculations

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14. Commits on Oct 5, 2017

    • A new dome for quat symmetry detection

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15. Commits on Oct 4, 2017

    • New bioassembly demo

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16. Commits on Sep 8, 2017

    • Making it clear that the soft memory cache is a singleton

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    • Fix for new tests so that they don't pollute other tests

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    • Solving #704 and adding some tests for #703

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    • Fixing phosphosite urls and changing default url timeout to 30s

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17. Commits on Aug 9, 2017

    • fixed minor issue with lack of this keyword, re-ran tests

      

      luke czapla

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    • made max values non-static and created final DEFAULT constants

      

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    • Renamed MaxStagger (etc.) to maxStagger (etc.)

      

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    • Subclasses not serializable

      

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18. Commits on Aug 6, 2017

    • Structure object unmarked as transient for serialization

      

      luke czapla

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19. Commits on Aug 5, 2017

    • Merge remote-tracking branch 'upstream/master'

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      luke czapla

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20. Commits on Aug 3, 2017

    • Merge branch 'master' of github.com:biojava/biojava into serialize

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21. Commits on Aug 2, 2017

    • Fixing test after PDB v5 remediation

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22. Commits on Jul 31, 2017

    • getters and setters all have full sentence JavaDoc

      

      luke czapla

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    • removed added * import

      

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    • Full sentence revision of all JavaDoc and addition of separate error checking method

      

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23. Commits on Jul 28, 2017

    • and the other files

      

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