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1. Commits on Mar 24, 2016

   • [maven-release-plugin] prepare for next development iteration

     abradle

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   • [maven-release-plugin] prepare release biojava-5.0.0-alpha2

     abradle

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2. Commits on Mar 22, 2016

   • Fix small jmol display bug for internal symmetry

     lafita

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3. Commits on Mar 10, 2016

   • [maven-release-plugin] prepare for next development iteration

     andreasprlic

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   • [maven-release-plugin] prepare release biojava-4.2.0

     andreasprlic

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   • Light cleanup:

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     sbliven

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   • Running spacestotabs on recent changes

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     sbliven

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4. Commits on Mar 9, 2016

   • Merge branch 'master' into removeLoadChemCompInfo

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     josemduarte

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   • Removing unnecessary casts

     sbliven

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   • More whitespace fixes

     sbliven

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   • Removing unused imports

     sbliven

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   • Automatically adding missing @Override

     sbliven

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   • Converting initial spaces to tabs.

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     sbliven

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   • Removing OpenAstexViewerImpl

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     sbliven

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   • Removing template messages

     sbliven

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   • Remove trailing whitespace globally from .java files

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     sbliven

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5. Commits on Mar 8, 2016

   • Merge branch 'master' into removeLoadChemCompInfo

     josemduarte

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   • Merge remote-tracking branch 'biojava/master'

     sbliven

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   • Removing loadChemCompInfo, some tests don't pass yet

     josemduarte

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6. Commits on Mar 7, 2016

   • Final CeSymm display options before release

     lafita

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7. Commits on Mar 4, 2016

   • Fix #385. Support BIO: identifiers

     sbliven

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8. Commits on Mar 3, 2016

   • Merge branch 'master' of ssh://github.com/biojava/biojava

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     andreasprlic

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   • Use homologous structure derived matrix HSDM for msa tree building

     lafita

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   • Correct significance criteria for internal symmetry

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     lafita

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9. Commits on Mar 1, 2016

   • fixing broken demo

     andreasprlic

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   • this example was using the wrong Parameter class. fixed

     andreasprlic

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10. Commits on Feb 10, 2016

    • Merge branch 'master' of github.com:biojava/biojava

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      andreasprlic

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    • adding utility method

      andreasprlic

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11. Commits on Feb 5, 2016

    • Change substitution matrix to SDM for symmetry phylogeny

      lafita

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    • Print a summary of internal symmetry in Jmol display

      lafita

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12. Commits on Feb 4, 2016

    • Use HSDM substitution matrix instead of BLOSUM45 in MSA trees

      lafita

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    • Change all references to Subunits to Repeats for consistency in CeSymm

      lafita

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13. Commits on Feb 3, 2016

    • Fix bugs in Phylogenetic tree display

      lafita

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    • Superimpose freely at the end in case more than one symmetry level

      lafita

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    • New feature, show phylogenetic trees for Multiple Structure Alignemnts

      lafita

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