volcano-plot

Automatic descriptor selection and volcano curve generation

Streamlit-based web application for scientific data cleaning, basic statistics, and interactive data visualization. Designed for researchers, students, and small labs to easily upload .csv or .tsv files, clean data, generate plots, and download results — all without writing code.

🧬 CNI is a Python toolkit for analyzing and visualizing RNA-seq data with a focus on cellular networks and pathway analysis. Create volcano plots, heatmaps, PCA plots, and more from Excel datasets. 🔍📊🐍

Bioinformatics tasks: DNA-protein translation, Hamming distance, and six visualizations for gene expression & breast cancer data using Pandas, Seaborn, Matplotlib.

A multi-omics analysis framework for cancer survival prediction (KIRC/LUSC). Utilizes LASSO feature selection, Cox Regression, and Volcano plots to identify genomic biomarkers and predict patient outcomes from TCGA data.

RNA-Seq differential expression pipeline with validation, FastAPI REST API, and interactive volcano plot dashboard

Transparent statistical pipeline for identifying biomarkers associated with neurological disease progression. Spearman correlations, Mann-Whitney group comparisons, volcano plots, and FDR correction.

Differential-expression volcano plot toolkit highlighting significant up- and down-regulated genes.

Differential Expression Analysis Pipeline for TCGA data (Python + PyDESeq2) with publication-quality plots.

Interactive Transcriptomics & DEG Visualization Dashboard

Publication-quality bioinformatics figures for RNA-seq: volcano, enrichment bubble, clustered heatmap. Nature/Cell/CN-core presets, CJK fonts, auto-generated Methods paragraphs.

Command-line bioinformatics tools: clean messy RNA-seq count spreadsheets, fetch PubMed abstracts and create publication-ready volcano plots (Python, pandas, Biopython, seaborn).

AI agent: from the published literature to magma-compressibility and surface-deformation reports for any volcano

Interactive Streamlit dashboard for differential gene expression. It runs Student’s t-tests and log2 fold change on a transcriptomic matrix and draws dynamic Plotly volcano plots.

Agent skill and CLI toolkit for querying, analyzing, and visualizing human RNA expression baselines and cis-eQTL regulatory associations from the GTEx Portal API V2 across 54 tissues into standalone interactive HTML dashboards.