tissue-engineering

A computational pipeline for analyzing tissue regeneration in volumetric muscle loss treatment studies. Enables automated processing of histological and immunohistochemical whole slide images to quantify tissue components, inflammatory responses, and regenerative markers. Provides standardized analysis of spatial tissue heterogeneity.

Code and data for: Fast computational screening of extrusion parameters for bioprinting of skeletal myoblasts in alginate hydrogel

The living book of Marshall

Literature-based technology assessment of skin substitutes and cultured epithelial autografts for severe burn care.

Skin BioDynaMo (SkiBiDy) is a modular hybrid agent-continuum skin simulation built on BioDynaMo

Deprecated version of my parametric .gcode file generator for bioprinting research written in C. (Bad)

💊🩺🩹 List of Awesome Open-Source Regenerative Medicine Tools🌟 Star if you like it! 🌟

A Python tool for comparing biomaterials and recommending scaffold-tissue pairings for tissue engineering applications

Conservative spherical oxygen transport for organoid research, with analytic and nonlinear numerical verification.

A simple tool for checking 3D printer run statistics.

Grasshopper algorithm for FRC-inspired scaffold generation.

Source code for manuscript (under preparation). Rapid and unbiased quantification of fiber directionality in biological tissues

The synthetic vascular generation Python package.

🫀 Interactive dashboard for biohybrid heart valve design and performance visualisation.

shsongli — independent third-party profile of a public API surface, by API Evangelist. shsongli (Shanghai Pine & Power / Songli Biotech Co., Ltd.) is a Shanghai-based biotechnology and medical-device maker specializing in the R&D, manufacture and sale of biological hemostatic products, most notably animal-derived quick-dissolving fibrin glue with i

Aspect Biosystems — independent third-party profile of a public API surface, by API Evangelist. Aspect Biosystems is a Vancouver, British Columbia biotechnology company developing Bioprinted Tissue Therapeutics — implantable, allogeneic living tissues designed to replace, repair, or supplement biological function in the body.

Landing Page - BioDimension

Motion Analysis of Ring-Shaped tissues - code from Seguret et al. 2024 eLife

Pandorum Technologies — independent third-party profile of a public API surface, by API Evangelist. Pandorum Technologies is a biotechnology company based in Bangalore, India, working in tissue engineering and regenerative medicine under the theme "building blocks of life." Its research and product pipeline spans a bioengineered cornea for corneal