API to read, write, and filter DNA sequence alignment files
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Local-first, US-align-powered tool for auditable multi-chain structure comparison, interactive 3D visualization, and publication-ready exports.
RNA/DNA 3D structure alignment tool
This is a Bayesian model for sequence and structure alignment of multiple proteins in a star phylogeny. The structural divergence across time is modelled by letting the dihedral angles of the backbones evolve according to a toroidal diffusion.
Align a 3D molecular structure to the viewing direction of its 2D SDF depiction
The list of tools and projects of the Laboratory of RNA Algorithms at IMol Polish Academy of Sciences
Web application for comparing and visualising RNA 3D motifs across many 3D structures
Structure-based alignment experiments in perturbed quantum circuits. Extension of G-series with no explicit structural responsiveness insertion.
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
Official code of RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment.
Official PyTorch Implementation of HSVA (NeurIPS'21)
A bioinformatics algorithm for generating sequence alignments from 3D structures
TP Bioinformatica - UTN FRBA
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