stringdb

An R client for STRING API

Raw scripts for annotation, Venn, heatmap, STRINGdb, and machine learning (ML) workflows.

This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.

This repository showcases bioinformatics analysis and visualization results from an independent project for a scientific writing course, utilizing iDEP and a microarray dataset derived from NCBI GEO.

This repository includes scripts, data, and documentation for analyzing Bulk RNA-seq data from NCBI GEO, supporting journal paper preparation in alignment with course requirements.

proteINET is a small toolkit to fetch, analyze and visualize protein–protein interaction (PPI) networks using the STRING database.

This repository contains the scripts of Functional and Global Network Analysis via stringDB

A pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

Customize your specific organism cellchatdb

Gexplora - user-interface to analyse genomic elements along chromosomes

Additional utilities for [STRINGdb](https://www.bioconductor.org/packages/release/bioc/html/STRINGdb.html).

Functional impact of cancer-specific isoform switching events: Visualization via STRING interaction network

Research compendium for Viscardi et al, 2020.

StringDB is a modular, key/value pair archival DB designed to consume *tiny* amounts of ram & produce *tiny* databases.