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singlecellgenomics

Here are 6 public repositories matching this topic...

ElliotXie / CASSIA

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

bioinformatics rna-seq annotation multiagent-systems single-cell singlecell cell-annotation singlecellgenomics ai4science llm prompt-engineering singlecell-data-analysis retrieved-augmented-generation

Updated Sep 11, 2026
Python

HelloWorldLTY / CVQVAE

Codes for paper: CVQVAE: A REPRESENTATION LEARNING METHOD FOR MULTI-OMICS SINGLE CELL DATA INTEGRATION

deep-learning vae-pytorch singlecellgenomics

Updated Dec 26, 2022
Python

csglab / gedi2py

A high-performance Python package for single-cell genomics

experimental pip singlecellgenomics scverse

Updated Jan 29, 2026
Python

rudrajoshi2481 / CellSage-AI

A python-based chatbot using LLaMA 3.2 (3B) and Crew-AI agents for single-cell genome sequencing.

singlecellgenomics crewai llama3 custompipelines

Updated Dec 2, 2024
Python

sumathigenomics / sg3_isostream

SG3_Isostream: A specialized single-cell long-read RNA-seq suite for isoform-level discovery. Featuring fuzzy-boundary read recovery, AnnData compatibility, and high-fidelity Sashimi visualization. Developed by Sumathi Genomics.

genomics rnaseq reads truncated singlecellgenomics

Updated Mar 14, 2026
Python

yaacoo / cross-species-transfer-learning

Utilize transfer learning to overcome limited available human data for cell cluster annotations

machine-learning clustering transfer-learning singlecellgenomics

Updated Sep 14, 2024
Python

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