sequencing

Data portal and API for Center for Viral Systems Biology (CViSB) data

Password generator using Python based on the principles of ASCII and concepts of sequencing.

Remove adaptors from short-read bisulfite sequencing data (coded in rust)

Generate number ranges

Read-only live MinKNOW dashboard for calibrated early prediction of Oxford Nanopore MinION yield at 30, 60, and 120 minutes.

Protein Occupancy Profile Sequencing

Microbial fitness inference from barcode counts.

Analyze Whole Genome Bi-Sulfite Sequencing for Grape evolution in response to grafting

My Key Story presentation for Auckland Research Bazaar 2020

Build Docker container for Picard Tools and (optionally) convert to Apptainer/Singularity.

Build Docker container for RseQC and (optionally) convert to Apptainer/Singularity.

🧬 Python utilities for working with nucleotide sequence strings.

For partial completion of AS.410.713.81.SP26, deep sequencing analysis is performed on paired end sequencing of Yersinia pestis first against a reference genome with bowtie using Bioconductor packages in R and then compared with de novo assembly using Velvet

Experimental-design-aware QC, repair, and workflow export for sequencing analysis sample sheets.

Make personal protein databases using next generation sequencing data. (Personal copy)

Simulator of metabarcoding sequencing runs - Glorified ART wrapper

Reference-free FASTQ filter for rare germline and somatic variants