sbml-model

Python utilities for SBML extended for cpp

Physiologically based pharmacokinetic (PBPK) model of tirzepatide

Hepatocyte model of ischemia reperfusion injury (IRI)

Final Infobiotics Workbench implementation of SBOL and SBML conversion functionality, UI updates, and sequence fetching

Python package for managing systems and subsystems of SBML models

Glimepiride Web Application

A graphical editor for systems biology models.

This repository contains all changes made to the strain specific models of Corynebacterium striatum.

Physiologically based pharmacokinetic/pharmacodynamic (PBPK/PD) model of empagliflozin

Physiologically based pharmacokinetic/pharmacodynamic (PBPK/PD) model of dulaglutide

Test and grade genome-scale metabolic models (GEMs).

An AI agent to build and curate genome scale metabolic network models

This project provides a simulation framework for synthetic biology and metabolic engineering, with a focus on the analysis of metabolic models for the production of novel compounds.

Physiologically based pharmacokinetic/pharmacodynamic (PBPK/PD) model of canagliflozin

Easily use the memote command line interface from a docker container.

Interface between the Systems Biology Markup Language and Julia

A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.

Python package and workflow for EFM calculation via (mp)lrs and efmtool

sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.