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research-template

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GitHub template for reproducible research repos — two-layer Python 3.10+/uv monorepo splitting generic infrastructure from per-project code, with pytest coverage gates (60% infra, 90% projects), a 17-stage build pipeline, markdown-to-PDF rendering via pandoc/LaTeX, and 24 canonical exemplars.

  • Updated Sep 30, 2026
  • Python

Local-first research-agent workflows for defensible formal research outputs, with source-first gates, bounded routing, skill receipts, and delivery guards.

  • Updated Jul 24, 2026
  • Python

Template for composing multi-track active inference manuscripts — closed-form analytics, pymdp simulations, Lean 4 proofs, GNN/ontology notation — bound to shared sections by a typed sheaf engine with six machine-checked composition laws and a symbol gluing certificate.

  • Updated Sep 7, 2026
  • Python

Scaffold for publishing a dataset with a machine-readable data contract: JSON descriptors drive schema fingerprints, field-level constraint checks, SHA-256 file verification and quality gates, emitting data-dictionary and provenance-flow figures plus a FAIR release manifest with durable Zenodo identifiers.

  • Updated Sep 7, 2026
  • HTML

Scaffold for literature review and evidence synthesis — searches arXiv, Crossref, and local corpora, deduplicates hits, enriches abstracts and fulltext, then runs local Ollama (gemma3:4b) per-paper and corpus-level synthesis into references.bib, reading_report.md, corpus.json, and coverage plots. Deterministic caching, pinned seeds.

  • Updated Aug 19, 2026
  • Python

Scaffold for methods and protocol papers where the contribution is the procedure language itself: frozen-dataclass Python model compiles method plans to JSON, CSV worklists and Mermaid DAGs through four validation gates, with unit/dimensional safety, Kahn-order determinism and SHA-256 provenance hash chains.

  • Updated Aug 19, 2026
  • HTML

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