protein-family

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Here are 4 public repositories matching this topic...

eggzilla / cmv

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Visualize HMMs, CMs and their comparisons

haskell bioinformatics visualisation protein rna hidden-markov-model rna-family covariance-model protein-family

Updated Jul 12, 2019
Haskell

kaledhoshme123 / Using-Deep-Learning-to-Annotate-the-Protein-Universe

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Understanding the relationship between amino acid sequence and protein function is a long-standing problem in molecular biology with far-reaching scientific implications.

protein-structure protein classification protein-sequences protein-sequence protein-families cnn-classification protein-family

Updated Nov 11, 2022
Jupyter Notebook

KonNik88 / protein-family-classifier

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Classify proteins into functional families/domains using pretrained ESM embeddings with interpretable ML (SHAP/LIME), UMAP visualizations, and optional 3D rendering.

machine-learning bioinformatics pytorch esm embedding umap lime protein-family mlflow shap protein-classification

Updated Dec 7, 2025
Jupyter Notebook

raph333 / Consensus-residue-contact-calculator

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Identify residue contacts shared across all or most protein structures of a give protein family

pdb protein-family protein-structures

Updated Sep 22, 2019
Python

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