msms

A tool to identify intra-protein crosslinks using non-canonical amino acids and mass spectroscopy

proteoQC: an R package for proteomics data quality assessment.

Request management system for analytical labs

pClean: a tool for MS/MS spectrum preprocessing

metaX: a flexible and comprehensive software for processing omics data.

A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data

DeepRescore: rescore PSMs leveraging deep learning-derived peptide features

Mobitel Sri Lanka's SMS Library for Laravel. PHP / JS / TS

A package for MSMS spectral library prediction models from the field of (phospho-)proteomics, intended to facilitate the testing and comparison of different neural network architectures and existing models.

MSM tutorials modeled on the useful PyEmma tutorials but using the more up-to-date deeptime package

Calibrated trust and abstention for MS/MS molecular annotations

PDV: an integrative proteomics data viewer

Consult your data - MSMCP connects AI workflows to mass spectrometry data for local and auditable inspection, QC, search, and hypothesis testing.

MassFlow is a fast, reproducible toolkit for annotating tandem (MS/MS) mass spectra against local spectral libraries, with statistical confidence built in.