microarray

design of primers and probes for PCR/microarray by visual selection from aligned DNA sequences

R script used for the preparation of the initial input file, i.e. merging of various studies by logFC (LogFC),

Microarray data processing

Differential expression and KEGG GSEA analysis of NEQC-normalized Illumina microarray data comparing E. coli infection vs mock samples, using limma and clusterProfiler.

In silico research group's bioinformatics toolbox for network and machine learning analysis

Label-driven comparison of gene expression regions across measurement technologies. Microarray, bulk RNA-seq and single-cell in one question, local first, no API keys.

Parameter estimation of seeding and contamination rates on a triangular lattice using the method of simulated moments (MSM).

Affy microarray processing

mimager: The microarray imager

シークエンシング、生化学反応シミュレーション、および遺伝子発現プロファイリング等の生物情報科学的実験を行う。本実習は、生物化学科と合同で実施する。

Differential expression analysis of influenza A-exposed plasmacytoid dendritic cells (GEO GSE68849, Illumina microarray) in R with limma, with a rendered Quarto report.

scrape REVIGO Gene Ontology web app and plot results

Simple to use package for OMICS data analysis (featuring limma, WGCNA, GSEA)

Deconer: A Comprehensive and Systematic Cell Type Deconvolution Evaluator

Nextflow pipeline for microarray and RNA-seq

extract experimental metadata from GEO xml files

A Snakemake workflow to analyse Illumina methylation arrays

Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)

A collection of bioinformatics labs using R and Bioconductor. Focuses on RNA-seq and Microarray preprocessing, Gene Ontology (GO) functional enrichment, and biological network inference.