genome-wide-association-studies

LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.

An R package for plotting GWAS results from the GAPIT package

PowerBacGWAS: Power calculations for Bacterial GWAS

MOKA Snakemake pipeline for GWAS incorporating user provided multi-omics data sources such as gene expression, neural network weights, transcription factor binding, and evolutionary conservation scores.

CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.

LocusZoom in Jupyter notebooks

A Python distribution of iCARE, a tool for individualized Coherent Absolute Risk Estimation.

Identify and characterize pleiotropic SNPs from GWAS data to uncover shared biological mechanisms across multiple traits and diseases.

A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).

Object-Attribute Biclustering for Genome-Wide Association Studies

Daniel & Gabby's Notebook

Chromosome Overlap: code accompanying "Refining the genetic risk of breast cancer with rare haplotypes and pattern-mining" by Letsou et al. DOI: 10.26508/lsa.202302183

esohinformatics

Group Combined P-values

Federated pipeline for privacy-preserving GWAS screening