genome-analysis

A useful python package for working on genomic coordinates.

This code compares the theoretical and practical length distributions of fragments.

A Python CLI tool for veterinary professionals and researchers to analyze tumor DNA sequences, search veterinary literature, and generate comprehensive evidence-based reports using AI-powered agentic workflows.

Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms

Python CLI tool for CRISPR guide RNA design, annotation, and off-target analysis.

MAGset is a tool to analyze and compare MAGs of known species

Independent AI-based structural genome analysis framework using GRCh38.p14 for genome-wide structural feature extraction.

MRA, A Novel Multi-head Algorithm to Discover all Tandem Repeats in One Scan of DNA Sequences.

Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.

Simple Method to Detect Compositional Changes in Genomic

Analysis of drought metagenomic data using ENNB methods

Bioinformatics server built with Flask for genomic data analysis

Front-end for views and tables in web interface

The genome of the contractile demosponge Tethya wilhelma

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

Displays some information given a 23amdMe raw genome file.

A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.

VCF Analysis Agent using strands agent SDK and bcftools

Reproducible chicken functional genomics analysis combining cTWAS fine mapping and Ensembl VEP annotation with R, Quarto, and renv.

R code in R Markdown used for ucm genomes and genome analysis course