Protein 3D structure prediction pipeline
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
AIRFold Protein Structure Prediction System
De novo therapeutic peptide design pipeline using RFdiffusion and ESMFold to hallucinate NaV1.7 pain-channel blockers locally on CPU
De novo computational design of tumor-selective pH-conditional (pH 6.5 vs 7.4), cross-species EGFR miniprotein binders for the Anthropic × Adaptyv 2026 Challenge.
Cost-aware protein folding inference — routes cache → AlphaFold DB → ESMFold. Never compute the same structure twice.
MutFold | Human breast cancer associated mutant protein structure prediction and alignment application
The protein-engineering design loop as one Rust binary: mutate, fold, QC folders of models into Parquet, ESM-2 variant scoring, a terminal viewer, and a GA4GH TES 1.1 server. Science validated against mdtraj, FreeSASA, cctbx and PLIP in CI.
Lightweight AI drug virtual screening platform for biologic industry. Nearly 20 years of expertise in biopharma R&D, manufacturing, quality and regulatory affairs.
Unified Python library and CLI for protein structure prediction and inverse folding.
Code for "Ancient amino acid sets enable stable protein folds": protein design with reduced amino acid alphabets (RFdiffusion + ProteinMPNN), mutation simulations with ESMFold, and analysis of the designs.
a lightweight cli wrapper around ESMFold2 for fast protein complex prediction from FASTA input.
Rooted, dual-method (ML + Bayesian) phylogeny of the bacterial Hfq family, with archaeal SmAP outgroup rooting and ESMFold/Foldseek structural verification
Demonstration of ESMFold2 created by me. Hope is I deploy this in tandem with Neuroscience projects, particularly in understanding the contraindications of drugs on synapses.
ESM-Stream: Streamlit app for Protein Structure Prediction using ESMFold, powered by deep learning
NucleoScan: language-model prefix scanning (ESMFold) for residue-level prioritization of hydrogen/deuterium-exchange protection from a single protein sequence.
AI PROTEUS ($AIPROTEUS) - decentralized protein-folding platform: the community burns tokens to vote on molecular hypotheses, the AI folds them live in the Arena.
A protein sequence logo in 3D, wrapped around its own predicted structure. Amino acid letters stacked by how strongly a language model expects them, with no multiple sequence alignment anywhere.
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