ecological-models

Probability applied to genetics and ecology

Spatially Explicit Integrated Modeling System --- open-source, cross-platform, and high performance computation

Personal website

Stores here is are all materials including the webpage of the paper "Reinforcement Learning from Ecological Feedback (RLEF): A Framework for Aligning Language-Model Planning with Planetary Boundaries". Accepted by AAAI 2026 FSS.

Analyse, optimise and visualise macro-scale mussel farm structures in Grasshopper. Fetch Copernicus satellite data for field data (t°, salinity, chlorophyll, oxygen etc). Provide location in WGS84, time and site-specific ecological constants.

Automated Ecological Image Analysis: A Machine Learning Tool for Seed Counting and Pollinator Detection

An R package for simulating Generalised Management Strategy Evaluation

A comprehensive computational biophysics simulation suite consisting of various ecological interactions between microorganisms of different characteristics in varying environments. We plan to expand this into a complete biophysics education interface for anyone interested in an interdisciplinary approach to simulations in ecological sciences.

Interactive animated simulations of ecological models

Optimization-Simulation tool for Integrated Water Resource Management. Simulates & optimizes water allocation for irrigation, hydropower, and environmental flows using MOGA.

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

Repository di raccolta dati e codici per Exobioma

A computational Theory of Global Biodiversity- Based on Grinellian Niches

Data Analysis with R

Automated Translation of Network Data into Declaration Files Compatible with LIM and limSolve

A modular theory of nested self-evolving systems to simulate and govern dynamic ecological cognition in human-AI co-evolution.

Large-scale implementation (using the Split-Apply-Combine paradigm) of different metabolic adaptation models of species in a 2-species co-culture, based on a Consumer-Resource modeling framework in a Serial-Dilution setup, where species compete for nutrients that are supplied periodically.

R package: Intuitive niche-breadth estimation in multi-trait and phylogenetic dimensions.

🔁 Analysis of a system with three species in a competitive loop.