centromere

Centromics: visualing centromeres with multiple omics data

An algorithm for centromere assembly using long error-prone reads

Fast sequence alignment for centromere with RaMA

Scripts for the Nature Biotechnology paper, 2020: Automated assembly of centromeres from ultra-long error-prone reads

Centromere calculation from TRASH-derived repeat arrays: block merging, filtering, and gap profiling.

Accurately find CDRs and boundaries using a Hidden Markov Model

Interactive browser for centromeric structural variation - source, data pipeline and deployment.

Automated centromere satellite identification and multi-omics visualization for chromosome-level genome assemblies

Interactive browser for centromeric structural variation, on T2T-CHM13 v2.0. Companion to the medRxiv preprint.

Pipeline for telomere-to-telomere QC of genome assemblies: assembly stats, telomere detection, gap analysis, clustering, and visualization.

How PCAn point centromere calls change with assembly contiguity, read technology and sequencing depth, measured on 134 budding yeast assemblies, 69 Saccharomyces cerevisiae strain pairs and 462 read assemblies of 33 strains.