PhenoPixel: A web-based bioimage analysis platform for bacterial single-cell microscopy analytics.
Integrated Cell project implemented in pytorch
FLIM-focused framework for multimodal single-cell imaging: extract features from FLIM and QPI data, then analyze any tabular dataset interactively.
Shape-Out has been superseded by Shape-Out 2.
manipulation and analysis of phase microscopy data
A small tool in python to read the bright-field image data and the phase image data recovered from a Digital holographic microscope (DHM) and segment the nuclei to calculate physical parameters like roughness and volume.
High Intensity Peak Analysis for detecting High Intensity Cells
Data-management/glue layer for a cell-painting feature-extraction pipeline
PhenoPixel: A web-based bioimage analysis platform for bacterial single-cell microscopy analytics.
A script to plot traces of muscle contractions from video recordings. This is part of my ongoing PhD work.
Automated high-content screening pipeline for phenotypic drug discovery
Lightweight pipeline for preprocessing, segmentation, tracking, and analysis of fluorescence microscopy images.
Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.
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