bulkrnaseq

Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

A complete workflow for analyzing and visualizing bulk RNA-seq data.

RNA-seq Quality Control and Preprocessing Tool - Interactive Shiny application for comprehensive RNA sequencing data validation, quality assessment, filtering, and normalization. Developed at Harvard Medical School Department of Immunology for global research use. Topics

Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript

Bulk-RNA seq workflow

Study of pulmonary immune response to Toxoplasma gondii infection through bulk RNA-seq data analysis using data set GSE119855

Analysis of Bulk RNA Sequencing of Colon(LMMP) and DRG tissues of IBS mice.

Code for the MiSTR microfluidic stem cell atlas study of early human neural patterning.

Code used for the deconvoluting right atrium and sinus node bulk RNA-Seq into scRNA-Seq

Run various bioinformatics software for classifying the immune repertoire from bulk RNAseq

Tabula Muris Senis Transcriptomic Secretome Database Generation + White Adipose Depot Analysis