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bitap-algorithm

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CMU-SAFARI / GenASM

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Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis" at https://people.inf.ethz.ch/omutlu/pub/GenASM-approximate-string-matching-framework-for-genome-analys…

approximate-string-matching read-mapping hw-sw-co-design read-alignment bitap-algorithm pre-alignment-filtering genome-sequence-analysis
  • Updated Dec 19, 2022
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