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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 277

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 512 116

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 411 73

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 432 78

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 366 53

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 216 16

Repositories

Showing 10 of 271 repositories
  • sckitflow Public
    theislab/sckitflow's past year of commit activity
    Python 7 BSD-3-Clause 1 25 (2 issues need help) 4 Updated Oct 2, 2026
  • scfit Public
    theislab/scfit's past year of commit activity
    Python 2 MIT 0 1 2 Updated Oct 2, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Oct 2, 2026
  • scPDAC Public
    theislab/scPDAC's past year of commit activity
    Python 4 MIT 1 0 1 Updated Oct 1, 2026
  • single-cell-best-practices Public

    https://www.sc-best-practices.org

    theislab/single-cell-best-practices's past year of commit activity
    Jupyter Notebook 1,276 277 5 1 Updated Oct 1, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata's past year of commit activity
    Python 15 Apache-2.0 7 7 4 Updated Sep 30, 2026
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri's past year of commit activity
    Python 154 GPL-3.0 19 11 0 Updated Sep 30, 2026
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc's past year of commit activity
    Python 12 GPL-3.0 5 3 0 Updated Sep 30, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink's past year of commit activity
    Python 21 Apache-2.0 6 5 3 Updated Sep 29, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy's past year of commit activity
    Python 366 Apache-2.0 53 16 5 Updated Sep 29, 2026
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