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UW Sauro Lab

36 followers
Seattle
https://www.sys-bio.org
hsauro@u.washington.edu

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tellurium tellurium Public

Python Environment for Modeling and Simulating Biological Systems

Python 146 42
roadrunner roadrunner Public

Forked from AndySomogyi/sbmlsolver

libRoadRunner: A high-performance SBML simulator

C++ 63 31

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Showing 10 of 130 repositories

PathwayDesigner-rs Public

sys-bio/PathwayDesigner-rs's past year of commit activity

Rust 0 MIT 0 0 0 Updated Oct 15, 2026
roadrunner Public Forked from AndySomogyi/sbmlsolver
libRoadRunner: A high-performance SBML simulator

sys-bio/roadrunner's past year of commit activity

C++ 63 39 79 (1 issue needs help) 3 Updated Oct 14, 2026
libroadrunner-deps Public
Dependencies for libroadrunner

sys-bio/libroadrunner-deps's past year of commit activity

CMake 3 5 0 0 Updated Oct 14, 2026
pbg2sed2 Public
A translator of process bigraph files to SED2.

sys-bio/pbg2sed2's past year of commit activity

Python 0 MIT 0 0 0 Updated Oct 13, 2026
SED2 Public

sys-bio/SED2's past year of commit activity

Python 0 MIT 0 0 0 Updated Oct 12, 2026
pySED2Translate Public
A translator from SED2 to a python script, using libSED2.

sys-bio/pySED2Translate's past year of commit activity

Python 0 MIT 0 0 0 Updated Oct 12, 2026
sed2-test-suite Public
A test suite for interpreters of SED2 documents

sys-bio/sed2-test-suite's past year of commit activity

Python 0 MIT 0 0 0 Updated Oct 12, 2026
bifurcata-rs Public

sys-bio/bifurcata-rs's past year of commit activity

Rust 0 0 0 0 Updated Oct 9, 2026
websim Public

sys-bio/websim's past year of commit activity

Rust 0 0 0 0 Updated Oct 9, 2026
AAAIM Public
AI-Assisted Automated Annotation of Models

sys-bio/AAAIM's past year of commit activity

Jupyter Notebook 4 MIT 3 0 1 Updated Oct 9, 2026

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