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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 1.2k 200

  2. sparql-llm sparql-llm Public

    🦜✨ Chat system, MCP server, and reusable components to improve LLMs capabilities when generating SPARQL queries

    Jupyter Notebook 126 24

  3. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 93 40

  4. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 89 32

  5. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 77 24

  6. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 73 20

Repositories

Showing 10 of 171 repositories
  • training_repos_traffic_tracker Public Forked from WandrilleD/track_multiple_repos_traffic

    some code to track the traffic on multiple github repos beyond the 15 days limit

    sib-swiss/training_repos_traffic_tracker's past year of commit activity
    Python 0 2 0 0 Updated Oct 3, 2026
  • first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    sib-swiss/first-steps-with-R-training's past year of commit activity
    HTML 60 CC-BY-4.0 11 5 0 Updated Oct 2, 2026
  • sparql-llm Public

    🦜✨ Chat system, MCP server, and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm's past year of commit activity
    Jupyter Notebook 126 MIT 24 3 1 Updated Oct 2, 2026
  • first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    sib-swiss/first-steps-with-python-training's past year of commit activity
    Jupyter Notebook 73 CC-BY-4.0 20 4 0 Updated Oct 1, 2026
  • sib-swiss/intro-machine-learning-training's past year of commit activity
    Jupyter Notebook 77 CC-BY-4.0 24 2 0 Updated Sep 30, 2026
  • sparql-training Public

    This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.

    sib-swiss/sparql-training's past year of commit activity
    JavaScript 11 5 0 0 Updated Sep 29, 2026
  • Knoto-ID Public

    Topological invariants of open curves using the concept of knotoids

    sib-swiss/Knoto-ID's past year of commit activity
    C++ 9 6 0 0 Updated Sep 29, 2026
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples's past year of commit activity
    HTML 38 36 4 (1 issue needs help) 7 Updated Sep 28, 2026
  • sib-swiss/single-cell-python-training's past year of commit activity
    HTML 6 CC-BY-4.0 3 0 0 Updated Sep 27, 2026
  • sib-swiss/spatial-transcriptomics-training's past year of commit activity
    R 6 CC-BY-4.0 3 1 0 Updated Sep 27, 2026