Issues

• Enhancement: Local SpatialData object with remotely accessed pyramidal OME-ZARR image

  scverse/spatialdata#831 · Filter by author edoumazane opened on Jan 15, 2025
  4

• Jupyter kernel crashing with sdata.write

  scverse/spatialdata#827 · Filter by author josenimo opened on Jan 14, 2025
  4

• Problem with indices with left_exclusive join

  scverse/spatialdata#824 · Filter by author LucaMarconato opened on Jan 13, 2025
  1

• questions about alignment in Figure 2b

  scverse/spatialdata#816 · Filter by author yuling999666 opened on Jan 3, 2025
  4

• How to open the current Zarr based image data as OME-Zarr

  scverse/spatialdata#805 · Filter by author tischi opened on Dec 9, 2024
  3

• Elements should be validated before starting to write

  scverse/spatialdata#804 · Filter by author timtreis opened on Dec 9, 2024
  1

• Why is it necessary to produce invalid OME-Zarr images?

  scverse/spatialdata#803 · Filter by author tischi opened on Dec 6, 2024
  4

• Harmonize artifical dataset creation

  scverse/spatialdata#796 · Filter by author berombau opened on Nov 27, 2024
  1

• Rename SpatialElements

  enhancement ✨
  scverse/spatialdata#793 · Filter by author Marius1311 opened on Nov 22, 2024
  1

• idea: point on-disk representation using OME-NGFF

  scverse/spatialdata#789 · Filter by author keller-mark opened on Nov 14, 2024
  4

• Annotating coordinate systems

  scverse/spatialdata#780 · Filter by author LucaMarconato opened on Nov 13, 2024
  1

• Recommending a workflow for tiling (deep learning use case)

  scverse/spatialdata#774 · Filter by author berombau opened on Nov 12, 2024

• User documentation on how to setup jobs or run large analysis

  scverse/spatialdata#768 · Filter by author berombau opened on Nov 7, 2024
  1

• User documentation on different methods of benchmarking with SpatialData

  scverse/spatialdata#763 · Filter by author berombau opened on Nov 6, 2024

• User notebook showcasing SpatialData speed

  docs 📜
  scverse/spatialdata#762 · Filter by author berombau opened on Nov 6, 2024
  1

• Having auto-completion when using spatialdata-plot

  scverse/spatialdata#755 · Filter by author quentinblampey opened on Nov 5, 2024
  1

• New docs section: how to integrate spatialdata in your tool

  scverse/spatialdata#751 · Filter by author LucaMarconato opened on Nov 1, 2024
  1

• New easier table notebook

  docs 📜
  scverse/spatialdata#749 · Filter by author LucaMarconato opened on Nov 1, 2024
  2

• New easier intro notebooks

  docs 📜
  scverse/spatialdata#748 · Filter by author LucaMarconato opened on Nov 1, 2024
  1

• Make a biological transformation notebook

  docs 📜
  scverse/spatialdata#747 · Filter by author LucaMarconato opened on Nov 1, 2024
  1

• CLI for get_data_extent() and bounding_box_query()

  scverse/spatialdata#746 · Filter by author LucaMarconato opened on Nov 1, 2024

• CLI for modular creation/edit/concatenation of SpatialData objects

  scverse/spatialdata#745 · Filter by author LucaMarconato opened on Nov 1, 2024

• Faster version aggregate() method available

  method: aggregation 🔢needs: triageperformance 🚀priority: high
  scverse/spatialdata#744 · Filter by author LucaMarconato opened on Oct 31, 2024
  6

• Parallelize aggregate()

  performance 🚀
  scverse/spatialdata#743 · Filter by author LucaMarconato opened on Oct 31, 2024
  1

• Benchmark geopandas query methods

  performance 🚀
  scverse/spatialdata#742 · Filter by author LucaMarconato opened on Oct 31, 2024
  1