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engine.wrap Ops #283

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0e7c585
WIP: Write wrapper focusers
gselzer Mar 6, 2024
b6cde53
WIP: Create a suite of ComplexType RAI wrappers
gselzer Mar 20, 2024
ef0f1df
BIG WIP: Engine.wrap + fixes
gselzer Feb 11, 2025
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WIP: Create a suite of ComplexType RAI wrappers
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@gselzer
gselzer committed Feb 10, 2025
commit b6cde5345b5b65df7d656db397713d929057d1e2
356 changes: 356 additions & 0 deletions scijava-ops-image/src/main/java/org/scijava/ops/image/convert/RAIWrappers.java
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package org.scijava.ops.image.convert;

import net.imglib2.RandomAccessibleInterval;
import net.imglib2.converter.Converters;
import net.imglib2.img.basictypeaccess.*;
import net.imglib2.type.logic.BitType;
import net.imglib2.type.numeric.ComplexType;
import net.imglib2.type.numeric.complex.ComplexDoubleType;
import net.imglib2.type.numeric.complex.ComplexFloatType;
import net.imglib2.type.numeric.integer.*;
import net.imglib2.type.numeric.real.DoubleType;
import net.imglib2.type.numeric.real.FloatType;

/**
* Wrapper Ops for {@link RandomAccessibleInterval}s of {@link ComplexType}s.
* TODO: Add more types
*
* @author Gabriel Selzer
*/
public class RAIWrappers {

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<BitType> toBitType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new BitType(new LongAccess() {

@Override
public long getValue(int index) {
// TODO: Check correctness
return sampler.get().getRealDouble() != 0 ? -1L : 0L;
}

@Override
public void setValue(int index, long value) {
sampler.get().setReal(value != 0 ? 1 : 0);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<ByteType> toByteType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new ByteType(new ByteAccess() {

@Override
public byte getValue(int index) {
// TODO: Check correctness
return (byte) sampler.get().getRealDouble();
}

@Override
public void setValue(int index, byte value) {
sampler.get().setReal(value);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<UnsignedByteType> toUnsignedByteType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new UnsignedByteType(new ByteAccess() {

@Override
public byte getValue(int index) {
// TODO: Check correctness
return UnsignedByteType.getCodedSignedByte((int) sampler.get().getRealDouble());
}

@Override
public void setValue(int index, byte value) {
sampler.get().setReal(UnsignedByteType.getUnsignedByte(value));
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<ShortType> toShortType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new ShortType(new ShortAccess() {

@Override
public short getValue(int index) {
return (short) sampler.get().getRealDouble();
}

@Override
public void setValue(int index, short value) {
sampler.get().setReal(value);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<UnsignedShortType> toUnsignedShortType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new UnsignedShortType(new ShortAccess() {

@Override
public short getValue(int index) {
// TODO: Check correctness
return UnsignedShortType.getCodedSignedShort((int) sampler.get().getRealDouble());
}

@Override
public void setValue(int index, short value) {
sampler.get().setReal(UnsignedShortType.getUnsignedShort(value));
sampler.get().setImaginary(0);
}
}));
}


/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<IntType> toIntType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new IntType(new IntAccess() {

@Override
public int getValue(int index) {
return (int) sampler.get().getRealDouble();
}

@Override
public void setValue(int index, int value) {
sampler.get().setReal(value);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<UnsignedIntType> toUnsignedIntType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new UnsignedIntType(new IntAccess() {

@Override
public int getValue(int index) {
return UnsignedIntType.getCodedSignedInt((long) sampler.get().getRealDouble());
}

@Override
public void setValue(int index, int value) {
sampler.get().setReal(UnsignedIntType.getUnsignedInt(value));
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<LongType> toLongType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new LongType(new LongAccess() {

@Override
public long getValue(int index) {
return (long) sampler.get().getRealDouble();
}

@Override
public void setValue(int index, long value) {
sampler.get().setReal(value);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<UnsignedLongType> toUnsignedLong(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new UnsignedLongType(new LongAccess() {

@Override
public long getValue(int index) {
return (long) sampler.get().getRealDouble();
}

@Override
public void setValue(int index, long value) {
sampler.get().setReal(value);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<FloatType> toFloatType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new FloatType(new FloatAccess() {

@Override
public float getValue(int index) {
return sampler.get().getRealFloat();
}

@Override
public void setValue(int index, float value) {
sampler.get().setReal(value);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link FloatType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<ComplexFloatType> toComplexFloatType(
final RAIC input)
{
return Converters.convert(input, sampler -> new ComplexFloatType(new FloatAccess() {

@Override
public float getValue(int index) {
if (index % 2 == 0) {
return sampler.get().getRealFloat();
}
else {
return sampler.get().getImaginaryFloat();
}
}

@Override
public void setValue(int index, float value) {
if (index % 2 == 0) {
sampler.get().setReal(value);
}
else {
sampler.get().setImaginary(value);
}
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link DoubleType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<DoubleType> toDoubleType(
final RAIC input)
{
return net.imglib2.converter.Converters.convert(input, sampler -> new DoubleType(new DoubleAccess() {

@Override
public double getValue(int index) {
return sampler.get().getRealDouble();
}

@Override
public void setValue(int index, double value) {
sampler.get().setReal(value);
sampler.get().setImaginary(0);
}
}));
}

/**
* @param input the input image
* @return an output image whose values are equivalent to {@code input}'s
* values but whose element types are {@link ComplexDoubleType}s.
* @implNote op names='engine.convert', type=Function
*/
public static <C extends ComplexType<C>, RAIC extends RandomAccessibleInterval<C>> RandomAccessibleInterval<ComplexDoubleType> toComplexDoubleType(
final RAIC input)
{
return Converters.convert(input, sampler -> new ComplexDoubleType(new DoubleAccess() {

@Override
public double getValue(int index) {
if (index % 2 == 0) {
return sampler.get().getRealDouble();
}
else {
return sampler.get().getImaginaryDouble();
}
}

@Override
public void setValue(int index, double value) {
if (index % 2 == 0) {
sampler.get().setReal(value);
}
else {
sampler.get().setImaginary(value);
}
}
}));
}
}
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