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  1. boostdiff_inference boostdiff_inference Public

    BoostDiff - Inference of differential networks from gene expression data

    Jupyter Notebook 14 2

  2. meteor meteor Public

    `MeTEor` is an R Shiny application that offers the possibility to explore longitudinal metabolomics data. For this purpose, a variety of statistical analysis and visualization methods are implement…

    R 6

  3. trips trips Public

    Jupyter Notebook 1

  4. VISPER VISPER Public

    Visualization System for Interactions between Proteins and Drugs for Exploratory Research

    1

  5. laip-generator laip-generator Public

    R

  6. SPIDER SPIDER Public

    Interaktive Visualisierung von Medikamentenwirkung auf Proteine/Interactive visualization of drug effects on proteins

    Python

Repositories

Showing 10 of 12 repositories
  • FedDy-PAM Public
    scibiome/FedDy-PAM's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 1, 2026
  • FedPAM Public

    FedPAM is a federated framework for discrete Bayesian network learning using Probabilistic Adjacency Matrices (PAMs)

    scibiome/FedPAM's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Sep 21, 2026
  • PMEM_Evaluator Public

    This repository provides a simulation and benchmarking framework for evaluating precision matrix estimation methods (PMEMs) in differential co-expression analysis. It generates condition-specific covariance structures with known ground truth and simulates high-dimensional gene expression data.

    scibiome/PMEM_Evaluator's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 6, 2026
  • semantic-chunking-biomedical-rag Public

    Configurable semantic chunking for biomedical RAG replaces fixed-size chunking in BioMedRAG with entity- and trigger-aware strategies defined in config files.

    scibiome/semantic-chunking-biomedical-rag's past year of commit activity
    0 0 0 0 Updated Sep 6, 2026
  • VISPER Public

    Visualization System for Interactions between Proteins and Drugs for Exploratory Research

    scibiome/VISPER's past year of commit activity
    1 0 0 0 Updated Mar 5, 2025
  • nedrexdb_v2d Public Forked from repotrial/nedrexdb_v2d

    A dockerized version of the nedrexdb version 2

    scibiome/nedrexdb_v2d's past year of commit activity
    Python 0 GPL-3.0 3 0 0 Updated Mar 3, 2025
  • nedrexapi_v2d Public Forked from repotrial/nedrexapi_v2d

    Dockerized version of the nedrexapi version 2

    scibiome/nedrexapi_v2d's past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Feb 11, 2025
  • meteor Public

    `MeTEor` is an R Shiny application that offers the possibility to explore longitudinal metabolomics data. For this purpose, a variety of statistical analysis and visualization methods are implemented in MeTEor to help the user to get a quick overview of the data.

    scibiome/meteor's past year of commit activity
    R 6 GPL-3.0 0 0 0 Updated Oct 6, 2024
  • trips Public
    scibiome/trips's past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Aug 18, 2024
  • SPIDER Public

    Interaktive Visualisierung von Medikamentenwirkung auf Proteine/Interactive visualization of drug effects on proteins

    scibiome/SPIDER's past year of commit activity
    Python 0 0 0 0 Updated Jun 20, 2024
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