This toolbox contains minimal code for a Pathogens Portal Node (PPN). You can view a demo site at the URL below

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload t…

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

ChIP-seq peak-calling, QC and differential analysis pipeline.

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

Pipeline for whole genome sequencing analysis for outbreak detection and characterization of foodborne bacteria

This repository contains a internal web page for sequencing runs management for NextSeq and MiSeq Illumina machines.