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1. chromosort chromosort Public

   Reference-order genome assembly contigs from MUMmer alignments.

   Python 1

2. HeatSeq HeatSeq Public

   Cluster munitions for microbial genomic sequence data

   Python 2 1

3. Metagenomic_Population_Tracking Metagenomic_Population_Tracking Public

   Tracking prokaryote populations across samples with short-read mapping, MAGs, and population threshold detection

   Python 1

4. F100_Prok_Recombination F100_Prok_Recombination Public

   Repository for F100 method of prokaryote recombination analysis

   Python 5 5

5. 00_in-situ_GeneCoverage 00_in-situ_GeneCoverage Public

   Workflow to calculate ANIr and sequence coverage (depth and breadth) of genome(s) / MAG(s) from metagenomes by gene, intergenic region, contig, and whole genome.

   Python 8 2

6. Kraken-Bracken-plot Kraken-Bracken-plot Public

   Creates stacked bar plots from Kracken and Bracken output.

   Python 7