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@reconhub

R Epidemics Consortium

Consortium for epidemics analysis and outbreak response using R

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  1. incidence incidence Public

    ☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence

    R 57 14

  2. outbreaker2 outbreaker2 Public

    Disease outbreak reconstruction from epidemiological and genetic data

    R 36 22

  3. learn learn Public

    RECON learn: a free, open platform for training material on epidemics analysis

    HTML 36 29

  4. epicontacts epicontacts Public

    Handling, Visualisation and Analysis of Epidemiological Contacts

    R 18 19

  5. aweek aweek Public

    Convert dates to arbitrary week definitions 📆

    R 17 4

  6. deployer deployer Public

    Self-contained R environment on a thumb drive

    R 10 3

Repositories

Showing 10 of 71 repositories
  • outbreaker2 Public

    Disease outbreak reconstruction from epidemiological and genetic data

    reconhub/outbreaker2's past year of commit activity
    R 36 22 16 2 Updated Apr 20, 2026
  • projections2 Public

    A collection of tools for forecasting incidence using the incidence2 and EpiEstim packages.

    reconhub/projections2's past year of commit activity
    R 0 0 7 0 Updated Mar 27, 2026
  • epiflows Public

    ☣:airplane: Risk assessment of travel-related disease spread

    reconhub/epiflows's past year of commit activity
    R 19 13 3 4 Updated Mar 9, 2026
  • incidence Public

    ☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence

    reconhub/incidence's past year of commit activity
    R 57 14 17 4 Updated Jun 19, 2025
  • epicontacts Public

    Handling, Visualisation and Analysis of Epidemiological Contacts

    reconhub/epicontacts's past year of commit activity
    R 18 19 14 2 Updated Apr 17, 2025
  • projections Public

    Projections of future incidence

    reconhub/projections's past year of commit activity
    R 14 8 11 0 Updated Dec 6, 2024
  • recon_site_reboot Public

    RECON Site consolidation

    reconhub/recon_site_reboot's past year of commit activity
    Lua 0 0 6 0 Updated Dec 4, 2024
  • reconhub.github.io Public

    Official website for RECON - The R Epidemics CONsortium

    reconhub/reconhub.github.io's past year of commit activity
    R 32 MIT 65 3 2 Updated Aug 2, 2024
  • epitrix Public

    Small Helpers and Tricks for Epidemics Analysis

    reconhub/epitrix's past year of commit activity
    R 12 5 4 1 Updated Sep 20, 2023
  • task-covid19-webpage Public
    reconhub/task-covid19-webpage's past year of commit activity
    Vue 0 0 1 5 Updated Apr 21, 2023
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