- scripts for loading immune dataset into mongo db database
- scripts to calculate the frequency of vgenes over a given population
- make sure python3 and pymongo are installed
- make sure you have a valid mongodb account
- checkout source code from github
git clone https://github.com/pughlab/immds.git
python src/calculate_vgene_frequency.py
-n samwise
-u imm_user
-p somepassword
-s TLML
-o ~/Projects/tcell_clonality_blast
-f TLML_frequency_data