uncbiag repositories

60 repositories

Awesome-Foundation-Models
Public
A curated list of foundation models for vision and language tasks
transformer-models vision-transformer multimodal-models
transformer-models vision-transformer multimodal-models foundation-models large-language-models
64•1.2k•1•1•Updated Sep 14, 2026Sep 14, 2026
ICON
Public
A library for performing image registration using deep learning, regularized by inverse consistency
deep-learning medical-imaging registration
deep-learning medical-imaging registration image-registration
Jupyter Notebook
•
Other
•16•65•9•8•Updated Aug 28, 2026Aug 28, 2026
SegNext
Public
Rethinking Interactive Image Segmentation with Low Latency, High Quality, and Diverse Prompts (CVPR 2024)
interactive-image-segmentation vision-transformers segment-anything
interactive-image-segmentation vision-transformers segment-anything
Python
•
MIT License
•13•110•4•0•Updated May 26, 2026May 26, 2026
uniGradICON
Public
uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)
deep-learning medical-image-analysis medical-image-registration
deep-learning medical-image-analysis medical-image-registration
Python
•
Apache License 2.0
•27•234•23•4•Updated May 4, 2026May 4, 2026
SlicerUniGradICON
Public
Slicer Extension for uniGradICON: A Foundation Model for Medical Image Registration
image-registration 3d-slicer-extension
image-registration 3d-slicer-extension
Python
•
Apache License 2.0
•2•10•1•0•Updated Feb 4, 2026Feb 4, 2026
iSegFormer
Public
iSegFormer: Interactive Image/Volume Segmentation using Vision Transformers (MICCAI 2022)
pytorch medical-image-segmentation interactive-segmentation
pytorch medical-image-segmentation interactive-segmentation vision-transformers
Python
•6•31•0•0•Updated Oct 24, 2025Oct 24, 2025
LiftReg
Public
Official repository for LiftReg: Limited Angle 2D/3D Deformable Registration.
deep-learning 3d-reconstruction medical-image-registration
deep-learning 3d-reconstruction medical-image-registration backprojection
Python
•4•20•3•0•Updated Oct 17, 2025Oct 17, 2025
dgir
Public
Guiding Registration with Emergent Similarity from Pre-Trained Diffusion Models (MICCAI 2025)
Python
•2•11•0•0•Updated Sep 25, 2025Sep 25, 2025
equivariant_reg_2
Public
equivariant_reg_2
Jupyter Notebook
•0•0•0•0•Updated Sep 1, 2025Sep 1, 2025
LiVOS
Public
LiVOS: Light Video Object Segmentation with Gated Linear Matching (CVPR 2025)
deep-learning segmentation video-segmentation
deep-learning segmentation video-segmentation video-object-segmentation semi-supervised-video-object-segmentation
Python
•
MIT License
•3•48•3•0•Updated Sep 1, 2025Sep 1, 2025
SimpleClick
Public
SimpleClick: Interactive Image Segmentation with Simple Vision Transformers (ICCV 2023)
pytorch interactive-segmentation masked-autoencoder
pytorch interactive-segmentation masked-autoencoder vision-transformers
Python
•
MIT License
•44•259•5•1•Updated Aug 5, 2025Aug 5, 2025
pain-disparities-resnet
Public
Code used to train and evaluate model used in Master's paper on evaluating pain disparities (following Pierson et. al)
Python
•0•0•0•0•Updated Jul 15, 2025Jul 15, 2025
uncbiag-academic-kickstart
Public
TeX
•
MIT License
•0•0•0•0•Updated May 19, 2025May 19, 2025
anatomix_gradicon
Public
anatomix_gradicon
Python
•0•0•0•0•Updated Feb 11, 2025Feb 11, 2025
OAI_analysis_2
Public
Image analysis approaches to analyze the OAI magnetic resonance images
deep-learning registration segmentation
deep-learning registration segmentation atlas osteoarthritis cartilage
Jupyter Notebook
•
Other
•14•31•17•3•Updated Dec 19, 2024Dec 19, 2024
ExtensionsIndex
Public
Slicer extensions index
Python
•322•0•0•0•Updated Nov 26, 2024Nov 26, 2024
NePhi
Public
Official repository for NePhi: Neural Deformation Fields for Approximately Diffeomorphic Medical Image Registration (ECCV 2024)
JavaScript
•
MIT License
•2•11•1•0•Updated Sep 30, 2024Sep 30, 2024
OAI_analysis
Public
OAI image analysis pipeline
Python
•2•8•0•1•Updated Sep 2, 2024Sep 2, 2024
mermaid
Public
Image registration using pytorch
Python
•
Other
•30•185•8•2•Updated Jul 25, 2024Jul 25, 2024
PIANO
Public
Python
•
Apache License 2.0
•0•3•0•0•Updated Jun 8, 2024Jun 8, 2024
SegGuidedMMReg
Public
Repository for 'Multimodal Image Registration Guided by Few Segmentations from One Modality'
Python
•
Other
•0•3•0•0•Updated May 28, 2024May 28, 2024
mouse_brain_translucence
Public
Jupyter Notebook
•1•3•0•0•Updated May 3, 2024May 3, 2024
NAISR
Public
NAISR: A 3D Neural Additive Model for Interpretable Shape Representation
3d-reconstruction 3d-models shape-analysis
3d-reconstruction 3d-models shape-analysis interpretable-ai explainable-ai xai implicit-neural-representation
Python
•
MIT License
•3•18•0•2•Updated Apr 29, 2024Apr 29, 2024
uniGradICON_Slicer
Public
Python
•0•0•0•0•Updated Mar 26, 2024Mar 26, 2024
UniLMMV
Public
Python
•1•11•0•0•Updated Mar 25, 2024Mar 25, 2024
2D3DFluidReg
Public
This is the repository for paper "Fluid Registration Between Lung CT and Stationary Chest Tomosynthesis Images"
Python
•0•3•0•0•Updated Mar 1, 2024Mar 1, 2024
ByConstructionICON
Public
Jupyter Notebook
•1•4•0•0•Updated Feb 5, 2024Feb 5, 2024
dgc
Public
Python
•
MIT License
•0•0•0•0•Updated Dec 20, 2023Dec 20, 2023
diffusion-3D-discovery
Public
Python
•1•5•0•0•Updated Dec 19, 2023Dec 19, 2023
OCT-FDFD
Public
Simulates OCT images by solving Maxwell's equations through a Finite-Difference Frequency-Domain method
Python
•
MIT License
•1•2•0•0•Updated Dec 12, 2023Dec 12, 2023

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60 repositories

Awesome-Foundation-Models

ICON

SegNext

uniGradICON

SlicerUniGradICON

iSegFormer

LiftReg

dgir

equivariant_reg_2

LiVOS

SimpleClick

pain-disparities-resnet

uncbiag-academic-kickstart

anatomix_gradicon

OAI_analysis_2

ExtensionsIndex

NePhi

OAI_analysis

mermaid

PIANO

SegGuidedMMReg

mouse_brain_translucence

NAISR

uniGradICON_Slicer

UniLMMV

2D3DFluidReg

ByConstructionICON

dgc

diffusion-3D-discovery

OCT-FDFD

Repositories list

60 repositories