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    22 repositories

    • tidyomicsBlog

      Public
      The blog of tidyomics
      R
      •46•3•2•2•Updated Oct 27, 2026Oct 27, 2026

    • tidySummarizedExperiment

      Public
      Brings SummarizedExperiment to the tidyverse
      genomicstidyversebioconductor
      genomicstidyversebioconductorrnaseqtranscriptomicssummarizedexperiment
      R
      •7•32•3•3•Updated Oct 21, 2026Oct 21, 2026

    • tidybulk

      Public template
      Brings bulk and pseudobulk transcriptomics to the tidyverse
      pipetidy-datatidyverse
      pipetidy-datatidyversepcabioconductordeseq2entreztidytranscriptstranscriptomics
      R
      •27•181•13•4•Updated Oct 11, 2026Oct 11, 2026

    • omicslog

      Public
      Log operations of R omic analyses
      bioinformaticsreproducible-researchbioconductor
      bioinformaticsreproducible-researchbioconductor
      R
      •
      GNU General Public License v3.0
      •1•2•6•1•Updated Oct 9, 2026Oct 9, 2026

    • omicslog_dev

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 17, 2026Sep 17, 2026

    • tidySingleCellExperiment

      Public
      Brings SingleCellExperiment objects to the tidyverse
      ggplot2dplyrplotly
      ggplot2dplyrplotlytidyversebioconductortibbletidyrsingle-cell-rna-seqsingle-cell-sequencingsinglecellexperiment
      R
      •9•37•15•2•Updated Sep 15, 2026Sep 15, 2026

    • tidyprint

      Public
      Centralised biological data tidy abstractions and messaging
      R
      •
      GNU General Public License v3.0
      •0•2•5•0•Updated Sep 15, 2026Sep 15, 2026

    • tidy-intro-talk

      Public
      Intro talk for tidyomics project
      0•2•0•0•Updated Aug 24, 2026Aug 24, 2026

    • plyranges

      Public
      A grammar of genomic data transformation
      genomicsdplyrtidy-data
      genomicsdplyrtidy-databioconductordata-analysisgenomic-ranges
      R
      •20•156•37•0•Updated Jul 30, 2026Jul 30, 2026

    • tidyomicsHackathonTurku2026

      Public
      R
      •4•0•0•0•Updated Jul 8, 2026Jul 8, 2026

    • .github

      Public
      0•1•0•0•Updated Jun 2, 2026Jun 2, 2026

    • tidySpatialWorkshop

      Public
      Tidy spatial analyses workshop
      workshoptidyversebioconductor
      workshoptidyversebioconductorspatial-analysisimagingsingle-cell-rna-seqtidyomics
      TeX
      •
      Other
      •15•5•0•0•Updated May 21, 2026May 21, 2026

    • tidyomicsWorkshop

      Public
      Tidy genomic and transcriptomic analyses
      TeX
      •
      Other
      •15•1•3•2•Updated Oct 31, 2025Oct 31, 2025

    • tidyomics

      Public
      Easily install and load packages from the tidyomics ecosystem
      genomicstidyversetranscriptomics
      genomicstidyversetranscriptomicscytometry
      R
      •
      MIT License
      •2•75•15•0•Updated Oct 28, 2025Oct 28, 2025

    • tidydeseq2

      Public
      Repo with code demonstrating tidybulk for DESeq2
      R
      •
      MIT License
      •0•2•0•0•Updated Sep 11, 2025Sep 11, 2025

    • tidyomicsBlog_ARCHIVE

      Public archive
      The blog of tidyomics
      rgenomicstidyverse
      rgenomicstidyversebioconductorproteomicstranscriptomics
      HTML
      •
      Other
      •6•13•11•4•Updated Jul 12, 2025Jul 12, 2025

    • plyinteractions

      Public
      R
      •1•2•1•0•Updated Jul 10, 2024Jul 10, 2024

    • tidyomicsWorkshopBioc2023

      Public
      Tidy genomic and transcriptomic analyses
      TeX
      •
      Other
      •15•7•2•0•Updated May 18, 2024May 18, 2024

    • tidyomics_paper

      Public
      This repository includes the code used for the tidyomics paper
      R
      •1•1•0•0•Updated Mar 19, 2024Mar 19, 2024

    • tidy-genomics-talk

      Public
      R
      •2•18•0•0•Updated Oct 17, 2023Oct 17, 2023

    • genomics-todos

      Public
      0•0•10•0•Updated Aug 15, 2023Aug 15, 2023

    • tidy-ranges-tutorial

      Public
      TeX
      •1•5•3•1•Updated Aug 3, 2023Aug 3, 2023
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