Repositories list

• MethylDiver

  Public

  lrslab/MethylDiver’s past year of commit activity
  Local epiallele metrics from modBAM: methylation level, normalized entropy, and Jensen-Shannon distance.

  Python

  •

  MIT License

  •11 fork in lrslab/MethylDiver•00 stars in lrslab/MethylDiver•00 issues in lrslab/MethylDiver•00 pull requests in lrslab/MethylDiver•Updated Oct 20, 2026Oct 20, 2026

• mitovarr

  Public

  lrslab/mitovarr’s past year of commit activity
  Rust

  •00 forks in lrslab/mitovarr•00 stars in lrslab/mitovarr•00 issues in lrslab/mitovarr•00 pull requests in lrslab/mitovarr•Updated Oct 17, 2026Oct 17, 2026

• trackcluster-rs

  Public
  sequencingrnaseqpacbio+ 2

  sequencingrnaseqpacbiolongreadont

  Rust

  •

  Apache License 2.0

  •00 forks in lrslab/trackcluster-rs•44 stars in lrslab/trackcluster-rs•00 issues in lrslab/trackcluster-rs•00 pull requests in lrslab/trackcluster-rs•Updated Oct 9, 2026Oct 9, 2026

• mhv_polya

  Public

  lrslab/mhv_polya’s past year of commit activity
  Python

  •00 forks in lrslab/mhv_polya•11 star in lrslab/mhv_polya•00 issues in lrslab/mhv_polya•00 pull requests in lrslab/mhv_polya•Updated Sep 24, 2026Sep 24, 2026

• mtasemotif

  Public

  lrslab/mtasemotif’s past year of commit activity
  Python

  •

  MIT License

  •00 forks in lrslab/mtasemotif•22 stars in lrslab/mtasemotif•00 issues in lrslab/mtasemotif•00 pull requests in lrslab/mtasemotif•Updated Sep 23, 2026Sep 23, 2026

• trackclusterTU

  Public

  lrslab/trackclusterTU’s past year of commit activity
  Fast interval similarity and scalable clustering for bacterial transcript units (TUs) from mapped long reads.

  rna-seqnanopore-sequencinglongreadsequencing

  rna-seqnanopore-sequencinglongreadsequencing

  Rust

  •

  MIT License

  •11 fork in lrslab/trackclusterTU•44 stars in lrslab/trackclusterTU•00 issues in lrslab/trackclusterTU•00 pull requests in lrslab/trackclusterTU•Updated Sep 10, 2026Sep 10, 2026

• SLRanger

  Public

  lrslab/SLRanger’s past year of commit activity
  Detection tool for operon and spliced leader designed for direct RNA sequencing

  Python

  •00 forks in lrslab/SLRanger•44 stars in lrslab/SLRanger•00 issues in lrslab/SLRanger•00 pull requests in lrslab/SLRanger•Updated Jul 13, 2026Jul 13, 2026

• lrslab.github.io

  Public

  lrslab/lrslab.github.io’s past year of commit activity
  HTML

  •00 forks in lrslab/lrslab.github.io•22 stars in lrslab/lrslab.github.io•00 issues in lrslab/lrslab.github.io•00 pull requests in lrslab/lrslab.github.io•Updated May 16, 2026May 16, 2026

• nanoSundial

  Public

  lrslab/nanoSundial’s past year of commit activity
  A de novo modification detection tool that targets current features based on 004kit for prokaryotes

  nanopore-sequencingrna-modification

  nanopore-sequencingrna-modification

  Python

  •

  Apache License 2.0

  •22 forks in lrslab/nanoSundial•2323 stars in lrslab/nanoSundial•11 issue in lrslab/nanoSundial•00 pull requests in lrslab/nanoSundial•Updated May 16, 2026May 16, 2026

• CN-AML

  Public

  lrslab/CN-AML’s past year of commit activity
  nanopore whole-genome sequencing of cytogenetically normal acute myeloid leukaemia

  R

  •00 forks in lrslab/CN-AML•00 stars in lrslab/CN-AML•00 issues in lrslab/CN-AML•00 pull requests in lrslab/CN-AML•Updated Apr 14, 2026Apr 14, 2026

• DVG_ONT_scripts

  Public
  This repository contains a collection of Python and R scripts used for analyzing Nanopore direct RNA sequencing (DRS) data in paper "Unique Production of Abunda…

  R

  •

  Apache License 2.0

  •11 fork in lrslab/DVG_ONT_scripts•00 stars in lrslab/DVG_ONT_scripts•00 issues in lrslab/DVG_ONT_scripts•00 pull requests in lrslab/DVG_ONT_scripts•Updated Feb 11, 2026Feb 11, 2026

• benchmark_CycloneSeq

  Public
  The resource table and links to CycloneSeq data processing

  00 forks in lrslab/benchmark_CycloneSeq•00 stars in lrslab/benchmark_CycloneSeq•11 issue in lrslab/benchmark_CycloneSeq•00 pull requests in lrslab/benchmark_CycloneSeq•Updated Dec 1, 2025Dec 1, 2025

• Bacteria-Multisequencing

  Public
  Open Repository of Scripts and Resources for Nanopore and NGS Sequencing of Eight Bacteria

  Python

  •

  MIT License

  •00 forks in lrslab/Bacteria-Multisequencing•00 stars in lrslab/Bacteria-Multisequencing•00 issues in lrslab/Bacteria-Multisequencing•00 pull requests in lrslab/Bacteria-Multisequencing•Updated Dec 1, 2025Dec 1, 2025

• anasfv

  Public
  The analysis pipeline for ASFV genome assembly and phylogenetic analysis.

  Python

  •

  MIT License

  •11 fork in lrslab/anasfv•44 stars in lrslab/anasfv•11 issue in lrslab/anasfv•00 pull requests in lrslab/anasfv•Updated Nov 28, 2025Nov 28, 2025

• Hammerhead-motif

  Public
  motif enrichment for hammerhead results

  Python

  •00 forks in lrslab/Hammerhead-motif•00 stars in lrslab/Hammerhead-motif•00 issues in lrslab/Hammerhead-motif•00 pull requests in lrslab/Hammerhead-motif•Updated Oct 29, 2025Oct 29, 2025

• CurEA

  Public
  CurEA (Current Event Alignment) Toolkit, designed for CycloneSeq data

  nanopore-sequencing

  nanopore-sequencing

  Rust

  •

  MIT License

  •00 forks in lrslab/CurEA•11 star in lrslab/CurEA•00 issues in lrslab/CurEA•00 pull requests in lrslab/CurEA•Updated Oct 19, 2025Oct 19, 2025

• nanoCEM

  Public
  "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

  nanopore-sequencing

  nanopore-sequencing

  Python

  •

  MIT License

  •22 forks in lrslab/nanoCEM•1818 stars in lrslab/nanoCEM•11 issue in lrslab/nanoCEM•00 pull requests in lrslab/nanoCEM•Updated Oct 13, 2025Oct 13, 2025

• Zebrafish-Multisequencing

  Public
  The scripts used in analyzing the zebrafish datasets.

  Python

  •

  MIT License

  •11 fork in lrslab/Zebrafish-Multisequencing•33 stars in lrslab/Zebrafish-Multisequencing•00 issues in lrslab/Zebrafish-Multisequencing•00 pull requests in lrslab/Zebrafish-Multisequencing•Updated Oct 8, 2025Oct 8, 2025

• cyclone_plasmid_DNA

  Public
  An example of using Cyclone sequencing to acquire plasmid DNA data for analyzing current changes due to DNA modifications

  Apache License 2.0

  •00 forks in lrslab/cyclone_plasmid_DNA•00 stars in lrslab/cyclone_plasmid_DNA•00 issues in lrslab/cyclone_plasmid_DNA•00 pull requests in lrslab/cyclone_plasmid_DNA•Updated Sep 29, 2025Sep 29, 2025

• TUFinder

  Public
  An integrated tool for analyzing transcription units (TUs) in prokaryotes using RNA-seq data, with functionalities for identifying transcription start sites (TS…

  Python

  •

  Apache License 2.0

  •00 forks in lrslab/TUFinder•00 stars in lrslab/TUFinder•00 issues in lrslab/TUFinder•00 pull requests in lrslab/TUFinder•Updated Jun 4, 2025Jun 4, 2025

• Hammerhead

  Public
  This project is designed to find the potential modifications in bacterial genomes.

  Python

  •

  GNU General Public License v2.0

  •11 fork in lrslab/Hammerhead•1515 stars in lrslab/Hammerhead•00 issues in lrslab/Hammerhead•00 pull requests in lrslab/Hammerhead•Updated Nov 6, 2024Nov 6, 2024

• MethylBin

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks in lrslab/MethylBin•00 stars in lrslab/MethylBin•00 issues in lrslab/MethylBin•00 pull requests in lrslab/MethylBin•Updated Sep 30, 2024Sep 30, 2024

• Giraffe_View

  Public
  Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.

  nanopore-sequencingquality-benchmarking

  nanopore-sequencingquality-benchmarking

  Python

  •

  MIT License

  •11 fork in lrslab/Giraffe_View•1313 stars in lrslab/Giraffe_View•00 issues in lrslab/Giraffe_View•00 pull requests in lrslab/Giraffe_View•Updated Sep 3, 2024Sep 3, 2024

• DRS_vRNA_modification_content

  Public
  Scripts used in our paper (Utilization of Nanopore Direct RNA Sequencing to analyze intracellular viral RNA modifications of the Sindbis virus)

  Python

  •

  MIT License

  •00 forks in lrslab/DRS_vRNA_modification_content•22 stars in lrslab/DRS_vRNA_modification_content•00 issues in lrslab/DRS_vRNA_modification_content•00 pull requests in lrslab/DRS_vRNA_modification_content•Updated Jul 12, 2024Jul 12, 2024

• ONT_DRS_bacteria_script

  Public
  Script of our Paper "Analysis of Transcriptome and Epitranscriptome in Bacteria Using Nanopore Direct RNA Sequencing"

  Python

  •11 fork in lrslab/ONT_DRS_bacteria_script•00 stars in lrslab/ONT_DRS_bacteria_script•00 issues in lrslab/ONT_DRS_bacteria_script•00 pull requests in lrslab/ONT_DRS_bacteria_script•Updated Mar 8, 2024Mar 8, 2024

• trackclusterv

  Public
  Viral Nanopore direct-RNA sequencing analysis pipeline, designed for RNA virus with complex genomic/subgenomic structures

  Python

  •33 forks in lrslab/trackclusterv•00 stars in lrslab/trackclusterv•00 issues in lrslab/trackclusterv•00 pull requests in lrslab/trackclusterv•Updated Dec 6, 2023Dec 6, 2023

• E11assembly

  Public
  The genome assembly annotations for E11 cell line

  Creative Commons Zero v1.0 Universal

  •00 forks in lrslab/E11assembly•00 stars in lrslab/E11assembly•00 issues in lrslab/E11assembly•00 pull requests in lrslab/E11assembly•Updated Dec 5, 2023Dec 5, 2023

• Interplay-between-ISVs-and-mosquito-cells-suppl

  Public
  Supplementary figure and tables for our manuscript "Insect-specific chimeric viruses potentiated antiviral responses and curbed pathogenic alphavirus growth in …

  00 forks in lrslab/Interplay-between-ISVs-and-mosquito-cells-suppl•00 stars in lrslab/Interplay-between-ISVs-and-mosquito-cells-suppl•00 issues in lrslab/Interplay-between-ISVs-and-mosquito-cells-suppl•00 pull requests in lrslab/Interplay-between-ISVs-and-mosquito-cells-suppl•Updated Nov 28, 2023Nov 28, 2023

• Scripts_merge_DRS_methods

  Public
  Scripts to merge tombo and xPore results from ONT data in our Paper (Utilization of Nanopore Direct RNA Sequencing to analyze intracellular viral RNA modificati…

  Python

  •11 fork in lrslab/Scripts_merge_DRS_methods•00 stars in lrslab/Scripts_merge_DRS_methods•00 issues in lrslab/Scripts_merge_DRS_methods•00 pull requests in lrslab/Scripts_merge_DRS_methods•Updated Oct 24, 2023Oct 24, 2023

• Benchmarking_for_ONT_reads

  Public
  The codes used to benchmark ONT reads.

  R

  •

  Apache License 2.0

  •11 fork in lrslab/Benchmarking_for_ONT_reads•44 stars in lrslab/Benchmarking_for_ONT_reads•00 issues in lrslab/Benchmarking_for_ONT_reads•00 pull requests in lrslab/Benchmarking_for_ONT_reads•Updated May 11, 2023May 11, 2023