jhudsl repositories

85 repositories

Adv_Reproducibility_in_Cancer_Informatics
Public
This course introduces more advanced tools to increase the reproducibility of data analyses; building upon the Intro to Reproducibility course. GitHub, Docker, …
github python docker
github python docker r course version-control reproducible-research code-review reproducibility github-actions
HTML
•
Creative Commons Attribution 4.0 International
•1•7•7•3•Updated Oct 5, 2026Oct 5, 2026
Reproducibility_in_Cancer_Informatics
Public
This course introduces the concepts of reproducibility and replicability in the context of cancer informatics. It is the first course in a two part course on re…
github python open-source
github python open-source data-science r course organization reproducible-research code-review informatics
HTML
•
MIT License
•2•2•7•0•Updated Oct 5, 2026Oct 5, 2026
AnVIL_Template
Public template
An OTTR spinoff template for creating AnVIL content
template anvil edtech-software
template anvil edtech-software
CSS
•
Creative Commons Attribution 4.0 International
•1•0•13•1•Updated Oct 3, 2026Oct 3, 2026
Computing_for_Cancer_Informatics
Public
This course is designed to help investigators understand more about computing basics, as well as familiarize researchers with various computing platform options…
course hardware software
course hardware software cloud-computing informatics etiquette computing capacity scalable-computing itn-course
TeX
•
Creative Commons Attribution 4.0 International
•2•4•5•1•Updated Oct 3, 2026Oct 3, 2026
tidyversecourse
Public
Tidyverse Skills for Data Science in R
r tidyverse
r tidyverse
R
•
Other
•20•29•0•1•Updated Oct 2, 2026Oct 2, 2026
template-test
Public
CSS
•
Creative Commons Attribution 4.0 International
•0•0•4•0•Updated Oct 1, 2026Oct 1, 2026
AnVIL_Book_WDL
Public
Running and writing your first WDL workflow on AnVIL for absolute beginners.
course module genomics
course module genomics wdl anvil workflows scalable-computing
CSS
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Creative Commons Attribution 4.0 International
•0•1•2•0•Updated Oct 1, 2026Oct 1, 2026
AnVIL_CoFests_2024
Public
Information about AnVIL Community Conference CoFest Sessions - November 2024
workshops conference anvil
workshops conference anvil
CSS
•
Creative Commons Attribution 4.0 International
•1•0•2•1•Updated Oct 1, 2026Oct 1, 2026
GDSCN_Book_Statistics_for_Genomics_scRNA-seq
Public
A set of lab modules for single cell RNA-seq analysis
rna-seq course module
rna-seq course module scrna-seq anvil scalable-computing gdscn
CSS
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Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Oct 1, 2026Oct 1, 2026
AnVIL_Phylogenetic-Techniques
Public
A semester-long course on the basics of molecular phylogenetic techniques
course phylogenetics anvil
course phylogenetics anvil r-programming scalable-computing
CSS
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Creative Commons Attribution 4.0 International
•0•0•2•0•Updated Oct 1, 2026Oct 1, 2026
AnVIL_Book_Champions
Public
One-stop resource for AnVIL Champions
guide anvil
guide anvil
CSS
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Oct 1, 2026Oct 1, 2026
GDSCN_Book_Statistics_for_Genomics_PCA
Public
A set of lab modules for PCA analysis
course module genomics
course module genomics pca anvil scalable-computing gdscn
CSS
•
Creative Commons Attribution 4.0 International
•0•0•1•0•Updated Oct 1, 2026Oct 1, 2026
GDSCN_Book_Statistics_for_Genomics_Differential_Expression
Public
A set of lab modules for an introduction to differential gene expression
course module genomics
course module genomics gene-expression cloud-computing anvil scalable-computing gdscn
CSS
•
Creative Commons Attribution 4.0 International
•1•0•1•0•Updated Oct 1, 2026Oct 1, 2026
GDSCN_Book_SARS_Galaxy_on_AnVIL
Public
Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy
course module genomics
course module genomics anvil variant-detection sars-cov-2 scalable-computing gdscn
CSS
•
MIT License
•2•0•3•0•Updated Oct 1, 2026Oct 1, 2026
text2speech
Public
Text to Speech
text-to-speech voice tts
text-to-speech voice tts speech-synthesis edtech-software
HTML
•
GNU General Public License v3.0
•4•21•15•0•Updated Sep 29, 2026Sep 29, 2026
Baltimore_nonprofits_assets
Public
Analysis to accompany article by Tyler Derreth et al. "Serving a Segregated City: An Analysis of Nonprofit Locations in Baltimore "
R
•0•0•0•1•Updated Sep 18, 2026Sep 18, 2026
AnVIL_ACC_Workshops_2026
Public
Information about AnVIL Community Conference Workshop Sessions - Aug/Sept 2026
CSS
•
Creative Commons Attribution 4.0 International
•0•0•12•0•Updated Jun 25, 2026Jun 25, 2026
intro_to_r
Public
A 2-week introduction to R programming course, with a focus on public health datasets
course tidyverse public-health
course tidyverse public-health beginner beginner-friendly r-programming beginner-programming data-science-programming
HTML
•
MIT License
•7•16•15•0•Updated Jun 18, 2026Jun 18, 2026
matahari
Public
🔎 I Spy With My Little Eye
R
•
Other
•4•50•4•0•Updated May 25, 2026May 25, 2026
AnVIL_Book_MAGE
Public
Walkthrough exploring the MAGE (Multi-ancestry Analysis of Gene Expression) dataset on AnVIL
CSS
•
Creative Commons Attribution 4.0 International
•0•0•3•1•Updated Apr 1, 2026Apr 1, 2026
DaSEH_fork_example2
Public archive
🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
HTML
•
MIT License
•4•0•0•0•Updated Jan 14, 2026Jan 14, 2026
test_borrow_chapter
Public
testing the ottrpal borrow chapter
CSS
•
Creative Commons Attribution 4.0 International
•0•0•5•0•Updated Dec 16, 2025Dec 16, 2025
AnVIL_CoFests_2025
Public
Information about AnVIL Community Conference CoFest Sessions - Sept 2025
workshops conference anvil
workshops conference anvil
CSS
•
Creative Commons Attribution 4.0 International
•0•0•5•1•Updated Nov 18, 2025Nov 18, 2025
GDSCN_Book_Statistics_for_Genomics_RNA-seq
Public
[WORK IN PROGRESS] A set of lab modules for RNA-seq analysis
CSS
•
Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Nov 12, 2025Nov 12, 2025
AnVIL_Book_Getting_Started
Public
A guide for getting started using AnVIL
course genomics guide
course genomics guide cloud-computing anvil scalable-computing
CSS
•
Creative Commons Attribution 4.0 International
•4•1•11•2•Updated Nov 12, 2025Nov 12, 2025
Documentation_and_Usability
Public
This course covers the basics of creating documentation and tutorials to maximize the usability of informatics tools. It is meant for individuals developing too…
documentation course software-development
documentation course software-development usability user-feedback user-friendly itn-course audience-software-developers category-software-dev launched-aug2021
CSS
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MIT License
•0•4•7•1•Updated Oct 16, 2025Oct 16, 2025
Informatics_Research_Leadership
Public
This course covers the pitfalls of informatics research and discusses best practices and tools to overcome the challenges of working with and managing multidisc…
course informatics leadership
course informatics leadership belonging research-management health-equity itn-course audience-leaders audience-researchers category-best-practices
CSS
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Creative Commons Attribution 4.0 International
•0•4•8•2•Updated Aug 1, 2025Aug 1, 2025
mscstts
Public
R Client for the Microsoft Cognitive Services Text to Speech REST API
R
•
GNU General Public License v3.0
•6•8•3•1•Updated Jul 21, 2025Jul 21, 2025
Baltimore_Community_Course
Public
Baltimore Community Data Science Course at JHSPH through partnership with SOURCE
data-science course community-outreach
data-science course community-outreach data4all
HTML
•
MIT License
•2•1•16•1•Updated Jul 1, 2025Jul 1, 2025
ITN_computing_resources
Public
HTML
•
MIT License
•1•1•6•1•Updated Jun 6, 2025Jun 6, 2025

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jhudsl

All

85 repositories

Adv_Reproducibility_in_Cancer_Informatics

Reproducibility_in_Cancer_Informatics

AnVIL_Template

Computing_for_Cancer_Informatics

tidyversecourse

template-test

AnVIL_Book_WDL

AnVIL_CoFests_2024

GDSCN_Book_Statistics_for_Genomics_scRNA-seq

AnVIL_Phylogenetic-Techniques

AnVIL_Book_Champions

GDSCN_Book_Statistics_for_Genomics_PCA

GDSCN_Book_Statistics_for_Genomics_Differential_Expression

GDSCN_Book_SARS_Galaxy_on_AnVIL

text2speech

Baltimore_nonprofits_assets

AnVIL_ACC_Workshops_2026

intro_to_r

matahari

AnVIL_Book_MAGE

DaSEH_fork_example2

test_borrow_chapter

AnVIL_CoFests_2025

GDSCN_Book_Statistics_for_Genomics_RNA-seq

AnVIL_Book_Getting_Started

Documentation_and_Usability

Informatics_Research_Leadership

mscstts

Baltimore_Community_Course

ITN_computing_resources

Repositories list

85 repositories