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    Repositories list

    22 repositories

    • FluSight_auto_AVG_LB

      Public
      This repository contains the AUTO_AVG_LB model that will be submitted to the FluSight competition
      R
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • CEID-Walk_2024-2025

      Public
      R
      •
      Other
      •0•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • Machine_Learning_SDM_Workshop

      Public
      Machine Learning Species Distribution Models in R: From Zero to Pro(blems). Computational Workshop developed by Victor Felix (2026) for the Center for the Ecolo…
      0•1•0•0•Updated Apr 7, 2026Apr 7, 2026

    • Influenza_ARIMAX_Models_and_Ensembles

      Public
      This repository has the models that are being used on the ARIMA and ARIMAX influenza manuscript
      R
      •0•1•0•0•Updated Feb 26, 2026Feb 26, 2026

    • malavi

      Public
      HTML
      •0•0•4•2•Updated Jan 16, 2025Jan 16, 2025

    • disasters-collide

      Public
      Code to produce map of intersection of social vulnerability, hurricanes, and COVID-19 outcomes
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Feb 10, 2023Feb 10, 2023

    • random-walks

      Public
      Fork of https://github.com/e3bo/random-walks (archive of CEID flu and covid forecast models)
      R
      •
      MIT License
      •3•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • 2019nCoV-Dashboard

      Public
      website for reporting 2019 novel Coronavirus risk and projections
      covid-19
      covid-19
      HTML
      •0•3•3•0•Updated Dec 26, 2022Dec 26, 2022

    • Fournie-etal_2015-interactions

      Public
      Pig - parasite interactions from Fournie et al. (2015) Veterinary Research doi.org/10.1186/s13567-015-0226-8
      0•0•0•0•Updated Sep 2, 2022Sep 2, 2022

    • COVID-19-DATA

      Public
      covid-19
      covid-19
      HTML
      •
      GNU General Public License v3.0
      •6•4•2•1•Updated Aug 30, 2022Aug 30, 2022

    • COVID-stochastic-fitting

      Public
      Repo for fitting a stochastic model to COVID data
      covid-19
      covid-19
      HTML
      •4•2•0•0•Updated Aug 19, 2022Aug 19, 2022

    • COVID-stochastic-fitting-manuscript

      Public
      Code for manuscript on semiparametric model of SAR-CoV-2 transmission
      covid-19
      covid-19
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 16, 2022Aug 16, 2022

    • covid-forecast-aws-ceid

      Public
      Fork of avranil26/covid-forecast-aws-ceid (archive of AWS-hosted covid data processing for forecasting)
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 22, 2022Jul 22, 2022

    • ncov-nowcast

      Public
      Nowcasting the COVID-19 pandemic
      covid-19
      covid-19
      HTML
      •0•0•0•1•Updated Jun 30, 2022Jun 30, 2022

    • ECOL8540-datavis

      Public
      Ecology 8540: Data visualization for ecology & epidemiology (Course materials)
      HTML
      •1•0•1•0•Updated May 25, 2022May 25, 2022

    • COVID-shiny-tracker

      Public
      covid-19
      covid-19
      R
      •3•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • COVID-shiny-forecast

      Public
      shiny app for forecasts from stochastic pomp model
      covid-19
      covid-19
      R
      •0•0•1•0•Updated Dec 22, 2021Dec 22, 2021

    • Spillover-review-of-reviews

      Public
      R
      •0•0•0•0•Updated May 13, 2021May 13, 2021

    • COVID-GA-model

      Public
      Code for fitting and simulating a stochastic, mechanistic model of COVID-19 transmission in Georgia.
      covid-19seir-modelcovid19-georgia
      covid-19seir-modelcovid19-georgia
      HTML
      •
      GNU General Public License v3.0
      •2•3•1•1•Updated Sep 29, 2020Sep 29, 2020

    • covid-university-reopening

      Public
      SLAIR Model for an outbreak of COVID-19 on a university campus with testing and generalized interventions
      covid-19
      covid-19
      HTML
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 20, 2020Aug 20, 2020

    • ncov-Reff-outside-China

      Public
      Estimation of effective reproduction number outside China
      covid-19
      covid-19
      HTML
      •0•3•0•0•Updated Apr 17, 2020Apr 17, 2020

    • COVID-GA-healthcare

      Public
      covid-19
      covid-19
      HTML
      •0•0•0•0•Updated Mar 27, 2020Mar 27, 2020
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