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[WIP] Gromacs apply_restraints (+ basic mdp parsing) - #971

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[WIP] Gromacs apply_restraints (+ basic mdp parsing)#971
hejung wants to merge 2 commits into
openpathsampling:masterfrom
hejung:gromacs_apply_restraints

Added mdp file parsing including types for all gromacs options we cou…

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