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Fix problems in to_mdtraj and notebook tests #776

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Merged
dwhswenson merged 10 commits into from
May 30, 2018
Merged

Fix problems in to_mdtraj and notebook tests #776

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cf8eb99
Use np.asarray on box_vectors
dwhswenson May 28, 2018
7c1cbd5
try set_auto_mask
dwhswenson May 28, 2018
cef823b
move set_auto_mask
dwhswenson May 28, 2018
b3352c0
Update toy_mstis_3_analysis notebook for pandas
dwhswenson May 29, 2018
e78b114
Update test_cv, test_netcdfplus notebooks
dwhswenson May 29, 2018
e69b281
CI numpy is 1.12; no floatmode option yet!
dwhswenson May 29, 2018
8c7b1ff
Update numpy in travis build
dwhswenson May 30, 2018
40ca372
update --no-pin on numpy
dwhswenson May 30, 2018
6ecbc66
use str.format to force identical formatting
dwhswenson May 30, 2018
f4feb9a
remove unneeded change to Traj.to_mdtraj
dwhswenson May 30, 2018
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try set_auto_mask
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@dwhswenson
dwhswenson committed May 28, 2018
commit 7c1cbd5110718e93c84af46a142d70f9ddd7c059
2 changes: 2 additions & 0 deletions openpathsampling/netcdfplus/netcdfplus.py
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Expand Up @@ -207,6 +207,8 @@ def __init__(self, filename, mode=None, fallback=None):

self.mode = mode

self.set_auto_mask(False)

exists = os.path.isfile(filename)
if exists and mode == 'a':
logger.info(
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